Gene VIBHAR_05078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05078 
Symbol 
ID5557907 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand+ 
Start bp311090 
End bp312136 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content42% 
IMG OID640909556 
Producthypothetical protein 
Protein accessionYP_001447212 
Protein GI156976306 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAACATA TTATTCGATT GCTAATTGTT GCTGCGACAG CGTTGTTGAT GTGGATGGAT 
TTCAAAATCT CAGCCTTAAG TCGAATAGAT ACACTTATTG ATTTCTCTCA ATCGATCAGA 
AACTTCACGT CGATGCCTAA CTATTCTTCT ACCACACAGT TTCCTTTCAA CGTTCCTAGT 
TACGTGACAG TGCACATGAC TAAAGAGCTC AATGCACTTT CTGACATAGC CAATTATAAA 
GAAGTGAGCC TCAACCCAAC TAACCGTGAA AACCTTGCGA ATAAACGGGA GACTTCTGTC 
TTAGAGAGTG ATGAGATATC AAGGGTCTAT CGTGTATATC TTGAAAATAG TAATGTTTAT 
CTTACGCGTT ATGATCCGAT CGTCGTAGAG CCATCATGTG TTCAGTGCCA TGGGTCTGTA 
GATACGGCGA TGGCGGAACA AATCGAGATG TATGGTCGTG ACGACGGTTT CAATTACAAA 
GTTGGGGATA TCTATGGGCT AAAGGTCGCT TCAATTGACA TCACCTGGTT CTTGCTAAGA 
TACGTTGGTC TGGCCGTATT GTTTGGAGTG CCAGTGGCTA TTTTGGTCAG CAGATATAAT 
CGAAAGCTTA ATGCTGCAAT GAACATCGAT GCGCTTTCTG GTGCGTTCAA CAAAAACTAT 
TACCTGAAGA CCAAACATAC TTTTGGTTCG GGCTATTTTC TTCTTTTTGA TATTGATGAC 
TTCAAGCAAA TCAATGATAC CCATGGGCAC CAATATGGCG ATATGGTGAT CAGTCAAGTT 
TGTCAGCTCT TAAAATCATA CTGTCGAGAC TCGGACCAAC TGTTCCGTTT TGGTGGTGAG 
GAGTTTGCTT TGTTTATGCA AGGGGACGCG TCTAAGCTGC GAGTTGAAGA TTTCTTAAAA 
AGTACACTCA ATGAAATAAG GCAGACATCG TTTGGCGACG AGCAGGTTAA GCTTCGAGTT 
ACTGTTTCTA TTGAGGTTTG CCACAAAGTG AAAGAACAGC ATATCGATGA CGTGATGTCG 
AAATCAGATA AGGCGCTATA CCCGTGA
 
Protein sequence
MKHIIRLLIV AATALLMWMD FKISALSRID TLIDFSQSIR NFTSMPNYSS TTQFPFNVPS 
YVTVHMTKEL NALSDIANYK EVSLNPTNRE NLANKRETSV LESDEISRVY RVYLENSNVY 
LTRYDPIVVE PSCVQCHGSV DTAMAEQIEM YGRDDGFNYK VGDIYGLKVA SIDITWFLLR 
YVGLAVLFGV PVAILVSRYN RKLNAAMNID ALSGAFNKNY YLKTKHTFGS GYFLLFDIDD 
FKQINDTHGH QYGDMVISQV CQLLKSYCRD SDQLFRFGGE EFALFMQGDA SKLRVEDFLK 
STLNEIRQTS FGDEQVKLRV TVSIEVCHKV KEQHIDDVMS KSDKALYP