Gene VIBHAR_03366 details

Gene Information

• Locus tag: VIBHAR_03366
• ID: 5553470
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 3397976
• End bp: 3398659
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640908846
• Product: hypothetical protein
• Protein accession: YP_001446540
• Protein GI: 156975633
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3121] P pilus assembly protein, chaperone PapD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAGGA TCACCACACT TCTTTTTTCT TTTTTGTTCA GTTCAATTAT TTTCGCGTAC 
GAGGTCAGTC CAATCTATTT AGAGCTAGAC GACGTTGGCC GAAACTCTCA AGGGTTGTAC 
AAAGTAACGA ATGTGGAGGA CGACCCAATA CTGCTGGAAG TCCATGTCTA TCAAGCCGAT 
TTCTCTTCAG GCGAGGAAAT CCTGACACCA TCAGAGGACG AGTTTCTCAT TCTCCCCCCT 
CAAGCTAAAA TCGACGGGCA AAAGTCCCAA ACCTTTCGCG TCCGTTACAC GCCCAAAAGA 
CCAATAAAAA AAACTGAGAC ATATCGAATC GTCTTTACCC AGATAGAACT CGACAACCAA 
ACTGAGGAGA ATGAAGAAGA TAGTTCTATC TCCATGCTAT TGGAGTTTGC TACGTTAGCT 
TTTGTTTCTC CAGCTTCAAG TAAGCCCATT CCAACCGCGA CCATTAAAAA CAATCAAATT 
GCAATCAGAA ATGACGGTAA ACGCGTACTG AACATGAATG GCATGGAATT TAGTTTCTCA 
GGTGGTAAGT CAAACAAAAC AGTCGATTGG GAAGCGTTAA GTAACAAAAC CAGTGCTTAT 
TTAATGCCGG GGTCAACGGT AAAGTACACT CTACCAAGTG AGCTGGGGCT GCCCCAAACA 
GTTTCTGTTA AAACAATAGA CTAG 

 

Protein sequence

MARITTLLFS FLFSSIIFAY EVSPIYLELD DVGRNSQGLY KVTNVEDDPI LLEVHVYQAD 
FSSGEEILTP SEDEFLILPP QAKIDGQKSQ TFRVRYTPKR PIKKTETYRI VFTQIELDNQ 
TEENEEDSSI SMLLEFATLA FVSPASSKPI PTATIKNNQI AIRNDGKRVL NMNGMEFSFS 
GGKSNKTVDW EALSNKTSAY LMPGSTVKYT LPSELGLPQT VSVKTID