| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01748 |
|---|
| Symbol | |
|---|
| ID | 5554638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 1751406 |
|---|
| End bp | 1755098 |
|---|
| Gene Length | 3693 bp |
|---|
| Protein Length | 1230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640907239 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001444944 |
|---|
| Protein GI | 156974037 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAATT GGACTTCAAA TGCGTTTAAC TTTGATAGTT TTTGTTCAGG GGGCGTAGAC
CAAAGAACAA GAAGCTACTC CTATCAAATT CTTCTCGGTT CCTTAGTCGG CAACTGGCTA
AAAGGCCCTA ACCTTGATAT CGCTCTGCAA TTTTCTCCCT ACTCGACAGA TAACCTAGGC
TTCGGCAAAG GTTGGAAGTT AAACATTCCA AGATACGATC TAAAAAATAA GCAACTGCAT
CTTGCGAATG GACAGTCTTA CCGAGCTGAA TTAGGTGCAA ACTACAAACT TGATCTCCGC
TACAAGAAGC TGCTCGATTT CTCCGTAAAA GCCGATGCCA GCGGTTATGA AATTACTTAT
CGAAATGGTC GTAAAGACAT CTTAGATGAT CACGGTAACC TAATTAAAAT CATTCAAAGT
GATGGCCATG CTTTGCATTT TTCTTGGTTA AACATCGGCT CAGAAAAACG CCTGAACAAA
GTCTGGGATG ACCGCACATC TGAGAGCCAA CCACTTTTGC TTATCGTCCA CGTGAATCCG
GGCAGAGTGA ATATTTTCAC CAACATTGGC AGTGCACACG AAGCGTATTT CAGCCTTATT
TTGAACAATA ATAACCTTGT TCAATGTAAC CTATCTGAAG ATGCAGGTAG CTATGACTTT
GGCTACAAAA CGATTGGGGC TTATAACCTA ATTCAGAGTG TCACCCACCC TTGTGGGATG
CTTGAGCAAC TTGCCTATGA AGCAAATGGG ATCAGAGTCA ACACCAACAC TTACCTCCCA
GCAGTGACTT CTCATCGTGT GCTGACTCGA AACTCGCCCA TTATTACGAC GGAGTATGAC
CGCGTAAATT CCGATAGCCG CAACTTTATG GGCTACGGCG TTCAGGGCGG CAGTTTAGGT
GAAGGTATCG ATAACCTTCT TGAACGTGGG TTCGAATACG CATACCAAGT ACAAAAAGTG
GAAGGTGGGA CGATTAAGAC CATTCAAACC TACAACCAAT TCCACTTGCT GGTTACAGAA
GAACGCCTAG TAAACAATGA ACTTGTTCAC CTCAAGACGC TTGGCTATCC CGCGCGTAAC
AATGAGAATT TTGCCAACCA GCCAGCTCAG TATGCCTTAA TCAACAAAGA AGAGCAGAAG
TGGTCATCGG GTGAAGATAG CCACCTACAA ACTCGTCATT GGGATTACGA TCAATACGGC
AACATGTTGT CTTTCAAAGA TGAAAACAAC ATCACTGAGT TTTATGAATA TTACTCGTCA
AAAGGGGAGT CTGGCTGCCC TGCTTCGCCT TCTGGCATGG TGAACTTTGT GAAGTCTCGC
ACCCTAAGTA ATGGATCTGA AGAACGTAAG ATCTCCTATG AGTACGGTGA AACGACTGGT
TTCAACAACC AAAAGGATGT CGTACTGCGC TTAGAAAATG CTCATGACCG CTACCAAAGC
CATTACAGCT ACCACGAGGA TAAAAACAAG GCGTTTTCTC TAGGTCGTTT AGCATCAATC
AAGAACGATA TCATGCATGC AGATGGTACC TTCTCAAAAA CCTCAAGCTA TCAGTACACC
TTGGGCAATG AGACGGTCGA GGAACATGAA GAACTGGTTT GCCACGACAA CACCAAAACT
AACGTCGTTG TCGGCCATTA TTTTGATATC GGCGAAATCG CTCATCACGT GGACGCAGAT
GGTGTTCGCT GTAGCTTTGA ATATGACTCG CTACGTCGTA CTAAAACCGA ACGTATTGAT
GGTAGTGCAG CACGCTCATA CCAATATCTT GTCGACACAA CCCAAGCTAG ACAAACTTTG
GTGCTGACAG ACTGTAAAGG CAACTTATGC GAACAGAGTT GGGATGGCCA AGGCAGAGAG
TTAGAAGCGA AACTAGGCAA CACAACCACT TGGAAGAAAG AGTACGACGC GCTCGGCCGC
CTAGAAAGCA AGAGCTCATT TGATGATCTT CCCGATAAAA ATGCACGCTC GATTTCTGTC
ACTCAAACCG AAAGGTATGA ATACGACGAT TGGGGTCAGG TGAAAGCCAC TACGCTGCCG
AATGGCAATC GTCACATTGC GTTTAACAAC CTCGCAAGCC GCCAAAAAAC ACAAGGCATT
GAGGGCTTAG CGTTAACAGT TAGCAATTTA AACAGTTGGG GATTGGAAGA TAGGAAGCAA
CAGGGTGATC GTGTTTGGCA TTATGAATAC GACGCTTGGG GTCGACTGAA AAAAGAAACC
GATCCTGCGA GTCAATCGAA AAGCTATCAA TACGATAAGT TTGATCGTGC GATTCATATT
ACTCAAGCTA ACAATGTGGC TCAGCAGATC ACCTACGCAG CGCATACTGA TCAAACACAA
GTCACCAAAC TAGAGATCGG TTCGCAGATC GTTGGTCAGC GTGACGTCGA CGGGTTGGGA
CGACCTCTTG AGCTTCGTCG AGGGGCGAGC AATCAAGCCT CTTTAGCGTG GACGTACGCA
GACAGCAGTA ATATTCCAGA AACGGAAACC AGCTTGTCCG CGCCAACAAG ACGTTTTACT
CGTGATGATC AATTAGGTGT TCTCAACGAG AAAGAATCCG GCGATCAGTT AACGACATAC
CAATACGATC CTGTTTCTGG CCTACCAACC GGCAGCCAAG ATAACAATGG CAGTCGCAGC
ACGATCACGT ATTCCTCAAC AGGCCTACCT GAGTTTGAAC AGCATGATGG AAGTATCCGC
CAATATGCTT ACTCAAAAGG CGGCGTGATT TCCTCCATTC AAGGTGCGCG TGATAGCCGT
CAGTTTGGCT ACGATGAGCT TGGTCGATTG GTCAAACTAA GTACGGATAA CGCCACTGTC
GAATACGAAT ACGATCAGTT TGATCGCGTT ACTGAAGAGC GTTTGACGTC CGGCAATCAA
ACACAAATCA CCGAGATTGA ATGGGATGAA TACAGTCGCG AAATCAATCG CGCGGTGGCA
CTCAACGACG TTTATATCTT TGAGCAGTCT CAAGACTATA ACGAACTTGG TTTGCTTCGC
TCTAGCGAAA AAGAATGTGC GACGCAGGGC AAGGTAACGG AGACGTACAC CTATGATTCA
CTCTCGCAGC TAAAGCGCGT CGATTTCTCA GGTAATGGTC CGCTCAGTGA TTGGAGGCAG
CCTATCGTAT TCCTTGAATG GAGCCACGAT GACCTAGGCA ATATGTTGAC TCAACGCTGC
GCAACCAACG AGTCCCAAGA CTTCGCGAAT TATTACTACG AAGCGGATGA TCCAACACAG
TTAACACGCA TCACTCACAC GCACCCTCAA CTTCCTAGTC AAACCGTACT GAAATATGAC
CAGAACGGAA ACATGATTCA GGATGCCGAA GGTCGAGAGC TTCGTTACGA CCACTTCGAC
AAACTCACTA GCGTGCTGTC CGGCAATACA GAATGGCAAT ACTCATACGA CAGTAATGAT
CGCCTAATCC GACAACATTC TGGCTCCGAA AGTCGTCAAT TTGAGTATTT ATGGAGTGAT
CTCGCGTCTA TCGAAGAAAA TGGCAGCGTC ACTCACTACA TCTACGATGA TGGCGTGCCG
AAATGGTCAG AGCAAGGTTC TGTTGTCTCT ATGCTAGCAA CCGATCAAAA CGGCTCTGTT
ATCGCTTCCA ACACAGCTGG TCAAACTGGC TCGATGTACC GCTACTCTCC ATATGGACAA
CGCGAACAGG TGGGAAATAC CAATGAGCAA TAA
|
|---|
| Protein sequence | MSNWTSNAFN FDSFCSGGVD QRTRSYSYQI LLGSLVGNWL KGPNLDIALQ FSPYSTDNLG
FGKGWKLNIP RYDLKNKQLH LANGQSYRAE LGANYKLDLR YKKLLDFSVK ADASGYEITY
RNGRKDILDD HGNLIKIIQS DGHALHFSWL NIGSEKRLNK VWDDRTSESQ PLLLIVHVNP
GRVNIFTNIG SAHEAYFSLI LNNNNLVQCN LSEDAGSYDF GYKTIGAYNL IQSVTHPCGM
LEQLAYEANG IRVNTNTYLP AVTSHRVLTR NSPIITTEYD RVNSDSRNFM GYGVQGGSLG
EGIDNLLERG FEYAYQVQKV EGGTIKTIQT YNQFHLLVTE ERLVNNELVH LKTLGYPARN
NENFANQPAQ YALINKEEQK WSSGEDSHLQ TRHWDYDQYG NMLSFKDENN ITEFYEYYSS
KGESGCPASP SGMVNFVKSR TLSNGSEERK ISYEYGETTG FNNQKDVVLR LENAHDRYQS
HYSYHEDKNK AFSLGRLASI KNDIMHADGT FSKTSSYQYT LGNETVEEHE ELVCHDNTKT
NVVVGHYFDI GEIAHHVDAD GVRCSFEYDS LRRTKTERID GSAARSYQYL VDTTQARQTL
VLTDCKGNLC EQSWDGQGRE LEAKLGNTTT WKKEYDALGR LESKSSFDDL PDKNARSISV
TQTERYEYDD WGQVKATTLP NGNRHIAFNN LASRQKTQGI EGLALTVSNL NSWGLEDRKQ
QGDRVWHYEY DAWGRLKKET DPASQSKSYQ YDKFDRAIHI TQANNVAQQI TYAAHTDQTQ
VTKLEIGSQI VGQRDVDGLG RPLELRRGAS NQASLAWTYA DSSNIPETET SLSAPTRRFT
RDDQLGVLNE KESGDQLTTY QYDPVSGLPT GSQDNNGSRS TITYSSTGLP EFEQHDGSIR
QYAYSKGGVI SSIQGARDSR QFGYDELGRL VKLSTDNATV EYEYDQFDRV TEERLTSGNQ
TQITEIEWDE YSREINRAVA LNDVYIFEQS QDYNELGLLR SSEKECATQG KVTETYTYDS
LSQLKRVDFS GNGPLSDWRQ PIVFLEWSHD DLGNMLTQRC ATNESQDFAN YYYEADDPTQ
LTRITHTHPQ LPSQTVLKYD QNGNMIQDAE GRELRYDHFD KLTSVLSGNT EWQYSYDSND
RLIRQHSGSE SRQFEYLWSD LASIEENGSV THYIYDDGVP KWSEQGSVVS MLATDQNGSV
IASNTAGQTG SMYRYSPYGQ REQVGNTNEQ
|
|---|
| |