Gene VIBHAR_00560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00560 
Symbol 
ID5554422 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp543334 
End bp544242 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content48% 
IMG OID640906055 
Productpermease 
Protein accessionYP_001443790 
Protein GI156972883 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC GTCGCGCCCT AGGATTTGGG CTATCAGCGG TATTACTTTG GTCAACAGTA 
GCGACCGCAT TTAAATTGAC TTTGGCGGAA TTCACACCGA TTCAGATGCT GACCATGGCG 
AGTATTGTCT CGGCCATCGC ACTCATCATG ATATGTGGTG TACAGGGGAA GTTGAATCAG 
CTCAGCTCGA CATTCCTTTC CAACCCTTGG TACTACTTAC TACTTGGGCT GATTAACCCG 
CTAGCGTACT ACCTTATTCT GTTTAAAGCC TACGACTTAC TGCCAGCCTC TCAAGCGCAG 
GCAATCAACT ACAGCTGGGC GATCACACTC ACCTTAATGG CAGCGGTTTT CTTAGGTCAG 
AAGATCCGCA GCAAAGACTG GATTGCTTGT GGTTTCAGTT ACTTGGGCGT TATCGTGATT 
GCCACCAAAG GCAATGTGTT GGGAATGGAG TTCGAAAGCC CACTTGGTGT CGGGCTAGCG 
CTGCTTTCTA CACTGCTGTG GGCAAGTTAC TGGATTCTCA ACACCAAAAA CAAAGCCGAC 
CCTGTAGTGG GCGTACTATT GGGTTTTCTG GTGGCGATTC CCTTTGCGAT TGGCTTAAGC 
ATTTACGAAG GCGCAAATTG GAGCCAAATC ACCGCAAAAG GTTGGGCGGC AGTGACCTAT 
GTTGGTCTGT TTGAGATGGG CGTAACCTTC GTGTTATGGC TATCTGCACT GAAGTTAACC 
GAGAACACAG CGCGCATCAG CAATCTGATT TTTGCTTCAC CGTTCATCTC ACTCATGCTG 
CTTTCTACTA TCATTGGCGA AGAGATTCAT CCATCCACTT TGATTGGCTT GGTGCTGATC 
ATCAGCGGTT TGGTCATACA ACAAGTGAAG TTTGGCAAGC AGCAAAAACA GGCAAACAAC 
GCTCAGTAA
 
Protein sequence
MNERRALGFG LSAVLLWSTV ATAFKLTLAE FTPIQMLTMA SIVSAIALIM ICGVQGKLNQ 
LSSTFLSNPW YYLLLGLINP LAYYLILFKA YDLLPASQAQ AINYSWAITL TLMAAVFLGQ 
KIRSKDWIAC GFSYLGVIVI ATKGNVLGME FESPLGVGLA LLSTLLWASY WILNTKNKAD 
PVVGVLLGFL VAIPFAIGLS IYEGANWSQI TAKGWAAVTY VGLFEMGVTF VLWLSALKLT 
ENTARISNLI FASPFISLML LSTIIGEEIH PSTLIGLVLI ISGLVIQQVK FGKQQKQANN 
AQ