Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4409 |
Symbol | |
ID | 5541922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5660362 |
End bp | 5662068 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640896507 |
Product | ABC transporter related |
Protein accession | YP_001434443 |
Protein GI | 156744314 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.466878 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0210144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAATA TGGGGCAACA ACACACCCCT ATTGCGCTGC ACCGTGTGAC CTTCACCTAC GCGGGAGCAA CCGAACCGGC GTTGCGCAAC GTAACGCTTA CGGTTCCTGC CGGTCAGATC TGCGCAGTTA TCGGCAGGGC CGGCGCCGGC AAAAGCACCC TCTGCGCGCT CTGCGCCGGC TTCGTGCCGC ACTTCTTTCG CGGTCGTCTC GACGGTGATG CGTCGGTTGA TGGATTGGCG ATAGCCACCC ATCCCATCGC CGAACTGGTG CGTCATGTGG CGCTGGTCGG CAGCAACGCC TTCAGCCAGA TCTCCGGCGC GCGGTTCACC GTGTACGACG AAGTGGCATT TGGGCTGGAA AATCTCGGCG TGCCGCGAGA AGAGATGATC GCGCGCGTCG AATGGGCGCT TCAGGCGCTT GGCATCGACC ATCTGCGTGA CCGTTCGCCT TATGCGCTGT CGGGTGGGCA GCAGCAGCGC ATGGTCATTG CCGCTGCGCT GGCGATGCGC CCGCCGGTGC TGGCGCTCGA TGAGCCAACT GCGCAGCTCG ACCCGCCGGC GATGGCGGAA TTGGCAGATG TGCTGCGGGC GCTGAGCCGG CAAGGGATGA CCATTCTGGT TGCCGAACAT CGGTTGGAAT GGGTTGCCGA CGTGGCGGAA CGGGTGGTGG CGCTGGATCG CGGCGCCGTT CTCGCCGATG GCGCGCCTGC CGATGTGCTG ACCGATCCGC GACTGTGCGA GCGTGGCATC GGTTGGACCC GTCCGACGAA AATAGCGGCA CAGGCGCGCA CCGACGGACG CTGGCCACCG AATCGTCCTC TGCCGATCAC GGTTGCCGAC CTTGTGGCGG GATTGCGCGC CATAGCCACA GGTCAGCATC CTGCGTCTGC ACAGGATGGC GCCATCGATT CAACGGGAGT CCAGCCAACG AGTGTACAGC GGATGACACA CAGCACCGAA CCTATCGTGA CACTCGATGA GGTGCATTTT ACGTACCCGA CCGGCGTTGA GGCGTTGCGT GGCGCATCGC TGGCGGTGCG ACGCGGTGAG CGGATTGCGC TGGTGGGGCG AAACGGTGCG GGAAAGAGCA CGCTGGTGCG ACATCTGAAC GGTCTGTTGC GCCCGTCGCG CGGGCGCGCC CTGGTGAACG GCATTGACAC GCGGACAACC ACTGTAGCGC GGTGCGCTCG TCATGTCGGC GTCGTCTTCC AGGATGTGCG CAATCAACTG TTTGCCCGCA CCGTGCGCGA CGAGATCCGT TTTGGACCAC AAAACCTGGG ATTTGCGCCG GAAAAGGTCG AGGCATTGAC CGAGACGGCG ATCGATGCGC TCGATCTGCG CGATGTCGTC AATGAGCATC CCTACGATCT GCCGCCTGCC CGTCGTCGTC TTGTGGCGGT TGCCGCAGTT CTGGCGATGG ACACGGCGCT GCTGGTGCTC GATGAACCGA CTGCCGGGCT TGACAACGCC AGCATCGATG TGCTGGCGCG GCTGATCGAC GATCTTGCGA CACGCCAGCG GAGTGTGCTG GTCGTCAGTC ACGACCTCGA TTTCTGTTAC GAGACGCTTG ATCGTGTTGT TCTCATGCGC GATGGGCGGA TCGCGCTCGA CAAACGTTTT GCAGAACTCG ACCGGGCGCA GATGGAAGCG CTCGACAGTG ATGTCGGGTT GCCCATCACG CTGCGCCTGC GTTACGTAAA CCCATAG
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Protein sequence | MNNMGQQHTP IALHRVTFTY AGATEPALRN VTLTVPAGQI CAVIGRAGAG KSTLCALCAG FVPHFFRGRL DGDASVDGLA IATHPIAELV RHVALVGSNA FSQISGARFT VYDEVAFGLE NLGVPREEMI ARVEWALQAL GIDHLRDRSP YALSGGQQQR MVIAAALAMR PPVLALDEPT AQLDPPAMAE LADVLRALSR QGMTILVAEH RLEWVADVAE RVVALDRGAV LADGAPADVL TDPRLCERGI GWTRPTKIAA QARTDGRWPP NRPLPITVAD LVAGLRAIAT GQHPASAQDG AIDSTGVQPT SVQRMTHSTE PIVTLDEVHF TYPTGVEALR GASLAVRRGE RIALVGRNGA GKSTLVRHLN GLLRPSRGRA LVNGIDTRTT TVARCARHVG VVFQDVRNQL FARTVRDEIR FGPQNLGFAP EKVEALTETA IDALDLRDVV NEHPYDLPPA RRRLVAVAAV LAMDTALLVL DEPTAGLDNA SIDVLARLID DLATRQRSVL VVSHDLDFCY ETLDRVVLMR DGRIALDKRF AELDRAQMEA LDSDVGLPIT LRLRYVNP
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