| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4396 |
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| Symbol | |
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| ID | 5541909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5648846 |
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| End bp | 5649802 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640896496 |
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| Product | integron integrase |
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| Protein accession | YP_001434432 |
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| Protein GI | 156744303 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.970236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0224938 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCTT CCGGCCATCC GCCCAGACTG CTCGATCAGG TGCGCGGCGC GCTGCGACGC
AAACACTACT CGCTCCGCAC CGAAGAGGCG TCTATCGGAT GGGTGCGCCG GTTCATCCGC
TTTCATAACC TGCGCCATCC GCGCGAGATG GGATCGCGTG AAATTGGCGC CTTCCTGACG
TACCTGGCCG TCGAAGAGGA GGTTGCCGCT TCGACCCAGA ACCAGGCGCT GAGCGCCTTG
CTCTTTCTGT ATCGCGAGGT GTTGCAGATC GAGCTTGACG CTGATCTCTC AATAACCCCT
GCCAAACGAC CTCAGTACCT GCCTGCCGCG CTTAGCCGCG CCGAGGTGCG CGCCGTGCTC
GCCGCGCTGT CGGGAACTCA TCAGTTGATG GCGCAACTGC TCTACGGCAG CGGGCTGCGC
TTGCTGGAGT GTTTGCGTCT GCGGGTGAAA GATCTTGATG TTGAGCAGCG CCAACTGATG
GTGCGGCAGG GTAAAGGCGG CAAGGATCGG GCGACGTTGC TGCCCGCACG ATTGCATGAG
CCGCTGCGCG CTCATCTCGA ACACGTGCGT TCGATCCACG AGCAGGATCT CCGCGAGGGC
TTCGGTGAGG TCTGGCTGCC CGACGCCCTG GCCCGGAAAT TGCCTTCCGC CAGCCGTGAA
TGGGTCTGGC AGTATGTGTT TCCGTCGAGC CGGCGCTCTG TCGATCCGCG TTCGGGCCGC
ATGATGCGCT ATCATCAAGA CGAAAGCGGG TTGCAGAAGG CTGTCCGGCG GGCGGCGCAG
CAGGCCAGCG TCCAGAAGCG CGTCACCTGC CACACGTTTC GCCATCGCTT CGCGACGCAT
GTGCGTGAGG CTGGCGATGA TATGCGCACC GTGCAGGATC TTCCGGGTCA CAAAGGATGG
GCAGACCACG ATGATCGACA CCCACGTCCT GCGCCGTGGG CCTGGCGGGG TGCGTAG
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| Protein sequence | MSSSGHPPRL LDQVRGALRR KHYSLRTEEA SIGWVRRFIR FHNLRHPREM GSREIGAFLT
YLAVEEEVAA STQNQALSAL LFLYREVLQI ELDADLSITP AKRPQYLPAA LSRAEVRAVL
AALSGTHQLM AQLLYGSGLR LLECLRLRVK DLDVEQRQLM VRQGKGGKDR ATLLPARLHE
PLRAHLEHVR SIHEQDLREG FGEVWLPDAL ARKLPSASRE WVWQYVFPSS RRSVDPRSGR
MMRYHQDESG LQKAVRRAAQ QASVQKRVTC HTFRHRFATH VREAGDDMRT VQDLPGHKGW
ADHDDRHPRP APWAWRGA
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