Gene Rcas_4345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4345 
Symbol 
ID5541858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5597810 
End bp5598574 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content59% 
IMG OID640896451 
Productchromosome segregation and condensation protein ScpA 
Protein accessionYP_001434387 
Protein GI156744258 
COG category[S] Function unknown 
COG ID[COG1354] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.331059 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCATCG AACCAATCGA TTACACCGTT ACCCTACCGA TCTTTGAAGG TCCTCTCGAT 
CTGCTGTTGC GTCTGATCGA ACGCGAAGAA CTCGATGTGA CCGGCGTGGC GCTGGCGCAC
GTCGCCGATC AGTATCTTGC CCACGTGCGC ACGATGGACG CGCCGGATCC GGCGTCGCTC
TCGGCGTTTC TGGTTGTGGC CGCACGTCTG ATGCTGTTGA AGTCACGGGC GTTATTGCCG
CGTCCCTCGA TTATCAGCGA TCAGGAACCC GACGACGAAG GCGAATCGTT GGTGCGTCAA
TTGCAGGAGT ATCAGCGTTT CAGGCGGTTG GCGGCGCTCC TGCGACGCTC CGAGGGCCAG
CGTATGTATC CACGGCTCGC TATGCCACCG GCGCCCCGCC CCGCGCGGCT CGACCATACC
ATCGCCGATC TGATTGCTGC CATGCAGCGT CGTATGCAAT TGATGCTGCC GCTCGATCCG
CCGCCGATGA CACTGCCTGC GCCAAAAATG GTCACGGTCG GCGAGATGAT CGATCGCATT
CGTTCATACT TACAGGAGCG TCCATGGGTT GCATTCGAGG AGATGATCGC GCTTGCCGCA
CACCGTGTCG AGATCGTCGT TGCGTTCTGG GCGGTCCTGG AATTGTGGAA GCGCCATGTT
GTCGTGGTCG AACAGGCTGG TTTGTTCGGC GTCATCGTGA TCCGGCGGGG AGTGTTGTTT
GGGAAAGAAG AACTAAGAAC TGAGACCCGA GAACTGACAG GTTAG
 
Protein sequence
MFIEPIDYTV TLPIFEGPLD LLLRLIEREE LDVTGVALAH VADQYLAHVR TMDAPDPASL 
SAFLVVAARL MLLKSRALLP RPSIISDQEP DDEGESLVRQ LQEYQRFRRL AALLRRSEGQ
RMYPRLAMPP APRPARLDHT IADLIAAMQR RMQLMLPLDP PPMTLPAPKM VTVGEMIDRI
RSYLQERPWV AFEEMIALAA HRVEIVVAFW AVLELWKRHV VVVEQAGLFG VIVIRRGVLF
GKEELRTETR ELTG