Gene Rcas_4272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4272 
Symbol 
ID5541783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5514235 
End bp5514864 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content59% 
IMG OID640896379 
Producthypothetical protein 
Protein accessionYP_001434317 
Protein GI156744188 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.396078 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCCAC AACCAGAGCT CTCCGGTGAA GCGCTCGACT CCGACGAGAT GGAGAGCCGT 
AGTCTTGTTT TTGCCCGGTT GTTATCGCAT ATTTTCAACC CGGTTTTCGT CACTATCACT
GCCTATCTGT TGATCGGTCT TCACACCCTG GACGAGGCGG GGCTTGCGTG GGTTGGCGGC
ATTATCGCTT TTCAAACGGC GCCATCGGTG CTGTATTATC TGGTGCGCTT GCGTCAGGGA
GGGTTCAGCG ATGCCGATGT GTCGGTGCGA CATGAGCGCA ATGAACTCTA CATGTTTGGC
ACGGTGTCGG TCCTGCTGAC GATTGGGCTG TTGCTGGCGC TAGACGCGCC ACGCCCGTTT
CTGGCGCTGA CGGTTGGCAT GCTGGGCATT GGCATTGTCT GCGGTTCGAT CAATCTGATC
TGGAAGATCA GCATGCACGG TGCAGCTATA GGCGCGCTGG CGACGCTGGC GCTGATCTAC
TCAAATGCGT TGGGGATTGC GTTCTGGATA TGCGCCGTCG CCGTCGCCTG GGCGCGAGTG
CGAACGCGCA ACCATACGCC AGGGCAGGTG ATCGCCGGCC TGGCTGTCGC TGCGATAGTC
GTCAGCGTGT CGTTTCTAGC ACTGGCGTGA
 
Protein sequence
MRPQPELSGE ALDSDEMESR SLVFARLLSH IFNPVFVTIT AYLLIGLHTL DEAGLAWVGG 
IIAFQTAPSV LYYLVRLRQG GFSDADVSVR HERNELYMFG TVSVLLTIGL LLALDAPRPF
LALTVGMLGI GIVCGSINLI WKISMHGAAI GALATLALIY SNALGIAFWI CAVAVAWARV
RTRNHTPGQV IAGLAVAAIV VSVSFLALA