Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4063 |
Symbol | |
ID | 5541574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5273055 |
End bp | 5275148 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640896175 |
Product | UvrD/REP helicase |
Protein accession | YP_001434113 |
Protein GI | 156743984 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.21557 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.035765 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGAT TTGAGCTTTC CTTCACTCCA ACGTTCTATT ACGAATCGCT CGACCTGCCG CGCCACGTGA GCAAGACCAT CACCAGAAAG TTGGAAACCA TCGCCGACGA TCCCTATTCA GCGCGCGGCG ATGCGAAGAA ACTCAAAGGG TACGACAATG TCTACCGCGT GCGGGTTGGC GACTATCGCA TCTGCTATTG CATCGGCAAA GGGTGGGTCA AACTGCTGAG CGTGCGCAAG CGTGATGAGC GCACATATGA AGATGACCTG CCTGATATTG CTCCGCCGGC ATTGCCGCCT GATCCTGTCA CGCTGACCCC CAGGGCGCAT GGCGCTGTCG AGGAGCAGTT TGTGCTCAGC AAACCGCCGA TGGATGCTGC ACTGTTATCC AGCGCGCTGC CGCCGAGTCG TCCGCTCCCA TTTCCAATAA CGGAAGATAT GCTGGAACGC TGGCGGATAC CCGCACAGTA CCGCACTATC ACGCTCACCG CGCGCACCGA GGACGATCTG CTCAATCTGC CGATCCCTGA ACGTCACCTC ACGCTCCTGC TCGACAATCT GTTCCCCCGA TCGCTCGATG CGATTGCTGC ACAGCCCGAA TTCGTGCTTT CAACGCCAGT CGATATCGAA CGATTTGCAG AAGAGGACCT GACCGGCTTT CTGCTGCGCC TCACGCCCGA TCAGGAACGA TTGGTGAACC AGGATCGCCG CGGACCTATC CTCGTCCGTG GCGGACCGGG AACCGGCAAA TCCACGCTGG CGCTCTACCG TGTGCAGCGC TTGCTCGAAC AGGGCGTCAC GTCGGTGCTC TTCACCACCT ACACGAATGC GCTGGTTGCC TATTCGGAGC AACTGCTGAC AAGACTGCTG GGCGCATCAC CCGACACTCG GGGGGTCAAA GTGACGACGG TAGATAGCCT GGCATTTCAC TACTTCGCCA GGGGGTGGGG ATCGCCCAGG CTTGCTACCG AAGGGCAGGC GACCGCGCTG CTCATGGATG CGCTCGCCAA TGCCGATATT CCTGCCGCCG ACGCCCATGA GCGTCGCGCA GCGCTGGAAC GACTCGGCGC CGAATATCTG CTCCAGGAAT TTCTGCACGT CATCGAAGCG CGAAATATCA ACAGCCTGGA AGAATACCTC GCCGTCGAGC GCCACGGACG GCGAATGCCG CTCAAACCGG CGCTCCGTGA GGCGCTCTGG GCAATCTATG TATCCTGGCG CGACCTGATG CGCGTCAAAG GGTTGGTGTT GAACGAACAG GTGCGACGCG GCGCAATGGA GTTCGCCGCC ACGCTGTCGC CCAAGCCCTA TCAGGCGCTG GTGATCGACG AAGCGCAGGA CCTGTCGCCG GCGGCGCTGC GCTTTTTGTT GAACCTGGTG GAAACGCCGG AGCATGTATA CCTGACGGCT GACGCATCAC AGTCGATCTA CCAGTGCGGT TTTAGCTGGA AGCAGGTACA CCGGACGCTC GCCATGGCCG GTCGAACGAT CCTGTTGAAA CAAAATTTCC GCAACACCGC ACAAATCCTG GCAGCCTGCG CCGGCATTCT GGCAGGCAGC AGCGCCGGCG AGGAAGAGAG CGTCCGGCAA ATTCCATCAG CGCATCACGG CGATCCGCCA CTCCTCCGAC TGGTGAACAA CGACTCGGAT GAATCTGAAG CGATCCGTGA TTTCTTCCTC GAAGCGGCGC GGCGTTACCG CCTGCCCACT CATAGCGGCG CCGTGCTGTG CACCAGCAGG CGCGCAGGGG AGGACATCGC CCTCCGCCTG ACGCGGTTGG GCATGCCCGC CGCATTTCAG TCGAGCAAAG ATGTTGACAT CACGACGCCG AAGGTCAAGG TGCTGACGCT CCATTCCGCC AAAGGGCTGG AGTTCCCATT CGTGGCAGTC GTGGGGCTGG ACGAAGGACG GTTCCCACGC ATCAGCGCAG ACCTGCCAGT CGAAGAAGCG CAAATGCAGG AGGACGAGCA ACGACGTCTC TTCTTTGTTG GCTGCTCACG CGCCATGCGC GCGCTCCTCG TCTGCGGATC GCAGGCAACG CCGTCACCAT TTCTGACGCC ACTGCAACCG CCGGTTTGGC GGAGGGAGGT TTGA
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Protein sequence | MARFELSFTP TFYYESLDLP RHVSKTITRK LETIADDPYS ARGDAKKLKG YDNVYRVRVG DYRICYCIGK GWVKLLSVRK RDERTYEDDL PDIAPPALPP DPVTLTPRAH GAVEEQFVLS KPPMDAALLS SALPPSRPLP FPITEDMLER WRIPAQYRTI TLTARTEDDL LNLPIPERHL TLLLDNLFPR SLDAIAAQPE FVLSTPVDIE RFAEEDLTGF LLRLTPDQER LVNQDRRGPI LVRGGPGTGK STLALYRVQR LLEQGVTSVL FTTYTNALVA YSEQLLTRLL GASPDTRGVK VTTVDSLAFH YFARGWGSPR LATEGQATAL LMDALANADI PAADAHERRA ALERLGAEYL LQEFLHVIEA RNINSLEEYL AVERHGRRMP LKPALREALW AIYVSWRDLM RVKGLVLNEQ VRRGAMEFAA TLSPKPYQAL VIDEAQDLSP AALRFLLNLV ETPEHVYLTA DASQSIYQCG FSWKQVHRTL AMAGRTILLK QNFRNTAQIL AACAGILAGS SAGEEESVRQ IPSAHHGDPP LLRLVNNDSD ESEAIRDFFL EAARRYRLPT HSGAVLCTSR RAGEDIALRL TRLGMPAAFQ SSKDVDITTP KVKVLTLHSA KGLEFPFVAV VGLDEGRFPR ISADLPVEEA QMQEDEQRRL FFVGCSRAMR ALLVCGSQAT PSPFLTPLQP PVWRREV
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