| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3997 |
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| Symbol | |
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| ID | 5541507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5209777 |
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| End bp | 5210589 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640896109 |
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| Product | tRNA pseudouridine synthase ACD |
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| Protein accession | YP_001434048 |
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| Protein GI | 156743919 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.541279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00061511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGAAATA TTGCGCTGCG TATCGAGTAC GATGGCACGG ATTTTGTCGG CTCTCAGTGG
CAAACCAATG GACGGTCAGT GCAGGGCGCA CTTGAAGCGG CCTGGCAGCA ATTGACCGGT
GAACGCCGCC GCATGATCCT GGCCGGACGC ACCGATGCCG GGGTGCATGC GCGCGGTCAG
GTCGCCAACG TCAGCACCAA TACCCGTCAT TCGCTGGCGA CGATCATTCG GGGATTGAAT
GGCGTTCTGC CAGAGGATAT TGGCATCCTC GCCGCTTGGG AAGTCCCTGA GGAGTTTCAC
GCGCGCTACT CGGCAGTGCG CCGTGAGTAT CGCTATGTGA TCGACAATGG GCGCACACCG
TCGCCGTTGC TGCGCCGCCA CGCCGCCTAT GTGCCACGCC GTCTCGATGT GGCAGCCATG
GATAGGGCGA TCCAGCAGGT GATCGGGACA CACGATTTCG CGCCATTGAG CGATGGGCCA
CAGGAAGGAT CGACGGTTCG TATCTGTTAC GATGCGCGTT GCACATGCAC CGAGGTGTGG
GGTCAACCGC TGGTGCTGAT CGATGTTGCC GCGAATGCGT TCCTGCGGCA TATGGTGCGC
AACTTGGTCG GAACGCTGAT CCAGGTCGGC GAAGGACGGA TCGATGCCGA TGGGTTCGCG
GCTGTGCTGG CAGGCGCCAA CCGACGCGCC AGGGTGCTGG CGCCGGCACA TGGGCTTTAC
CTGATGGCAG TGCGTTATCC AGAAGATGGC AACGCTGCGG CGGATACGTT GGTCGCAGCG
GTTGGAGTGA CCGAGACAAG GATGCAACTA TGA
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| Protein sequence | MRNIALRIEY DGTDFVGSQW QTNGRSVQGA LEAAWQQLTG ERRRMILAGR TDAGVHARGQ
VANVSTNTRH SLATIIRGLN GVLPEDIGIL AAWEVPEEFH ARYSAVRREY RYVIDNGRTP
SPLLRRHAAY VPRRLDVAAM DRAIQQVIGT HDFAPLSDGP QEGSTVRICY DARCTCTEVW
GQPLVLIDVA ANAFLRHMVR NLVGTLIQVG EGRIDADGFA AVLAGANRRA RVLAPAHGLY
LMAVRYPEDG NAAADTLVAA VGVTETRMQL
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