| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3996 |
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| Symbol | rplM |
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| ID | 5541506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5209340 |
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| End bp | 5209780 |
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| Gene Length | 441 bp |
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| Protein Length | 146 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640896108 |
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| Product | 50S ribosomal protein L13 |
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| Protein accession | YP_001434047 |
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| Protein GI | 156743918 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0102] Ribosomal protein L13 |
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| TIGRFAM ID | [TIGR01066] ribosomal protein L13, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000540909 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAACCT ACGCGCAGAA GGCGTCGGAG GTGCAGCGCG ACTGGTACGT GATCGATGCG
ACCAACCAGA CTCTCGGCCG GCTCGCAACA CAGATCGCTA CCCTGTTGCG CGGCAAGCAT
AAGCCGACGT TCAGCCCCTA TATCGACGGC GGCGACTTCG TGATCGTCGT CAATGCCGAG
CGTATTCGTC TGACCGGCAG GAAGCCGGAA CAGAAAATGT ACTATCGCCA TTCGAATTAT
CCCGGCGGTT TTAAGGCGGT GTCGTTCAAG CAGTTGATTG CACGCCATCC TGAGCGTGTG
CTGCGTTTCG CCGTCAAGGG TATGCTGCCA AAAACCCGCC TGGGGCGACG GCAATTGGCG
AAACTGAAGA TCTATGCCGG ACCAAAACAT CCGCACGCGG CGCAGCAGCC CAAAGTCTAT
GAACCGCGAC CGCGCGGCTA G
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| Protein sequence | MKTYAQKASE VQRDWYVIDA TNQTLGRLAT QIATLLRGKH KPTFSPYIDG GDFVIVVNAE
RIRLTGRKPE QKMYYRHSNY PGGFKAVSFK QLIARHPERV LRFAVKGMLP KTRLGRRQLA
KLKIYAGPKH PHAAQQPKVY EPRPRG
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