| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3978 |
|---|
| Symbol | |
|---|
| ID | 5541488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5189505 |
|---|
| End bp | 5190134 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896090 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_001434029 |
|---|
| Protein GI | 156743900 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | [TIGR03553] F420 biosynthesis protein FbiB, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0811138 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTG AACCGAATCG TCTGTCGCTC TCACTGGCGG AAATCATTCG GGGCCGGCGT
TCGGTGCGTC GCCTGTCGGA TCGTCCTGTC GCGCGTGAGC ATATTCTGGC GATGCTGGAA
GCGGCGCGGT GGGCGCCTTC GCCCCACGGA CGGCAACCGT GGCGGTTTGT GGTGTTGACC
CGCGCAGAAG TCAAACATAC ACTCGCCGCA GCAATGGGAG AGGAGTGGCG ACGCCAGCTG
GCACTCGATG GTCAGGACGC TGCAACAATC GACACTCGTG TGCGCAAATC ATATGAACGA
ATGACAAGCG CGCCCGTTGT TCTTCTGCCG TGTCTGTATA CCGTGAACCT CGATGTGTAT
CCCGATGAGG CGCGGAATGC CGCTGAAATA ACGATGGCTG TGCAAAGCCT CGGCTGTGCT
ATTCAGAATA TGTTGCTGAC GGCGTATGCG CTTGGTCTGG ACTGCGGGTG GATGTGTGCG
CCGTTGTTTT GCCCGGAAAC TGTCACGGCG GCGCTTGACC TGGATCCGGC GCTGATACCC
CATGCGCTGA TTACCGTTGG TTACGCCGCC GTCGAACCGG TCCGTCGGGA ACGGTTGCCG
TTGGAAGCAT TGATCGTTCG CTTTGACTGA
|
|---|
| Protein sequence | MTAEPNRLSL SLAEIIRGRR SVRRLSDRPV AREHILAMLE AARWAPSPHG RQPWRFVVLT
RAEVKHTLAA AMGEEWRRQL ALDGQDAATI DTRVRKSYER MTSAPVVLLP CLYTVNLDVY
PDEARNAAEI TMAVQSLGCA IQNMLLTAYA LGLDCGWMCA PLFCPETVTA ALDLDPALIP
HALITVGYAA VEPVRRERLP LEALIVRFD
|
|---|
| |