Gene Rcas_3936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3936 
Symbol 
ID5541442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5136757 
End bp5137305 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content60% 
IMG OID640896044 
ProductGCN5-related N-acetyltransferase 
Protein accessionYP_001433987 
Protein GI156743858 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1247] Sortase and related acyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.572414 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.835095 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACTG CCCCTCCCCA GGTTCCTTTT AACGCCACGC TGCGCGACGG ACGAGCGGTA 
CACATCCGCA TGATCGAAGC AGGAGACAAC GAGCGGCTGA TTGCCTTTGG CGCTGCACTG
CCCGAAAACG ACTGGCTGCA CGCCGAGAAC GACCTGCGCA GCCCGGAAGT GGTGGCGCGC
CTGGTCAATG CGCGCGATGC CGAGCACTGG CGACAGATCG TCGCCGTCGC ACCCGATGGC
GCCATTGTAG CCTATGCATC GGCGCGCCAG TTGCCAGGTC GTTCGAGCCA CGTGGCCGAC
ATTCAATTGA TTGTGGACAA AGCCTGGCGA CGCTGCGGGC TTGGCTCCGT CATGGCAGGT
GAAATCGTCG CCCATGCGCG CAAACTGGGG GTAGACAAAG TGTTCGTCGA TATGGTCGAG
GAACAAACAG CCGGCCAGGC CATTTTTACA CGCCTGGGTT TCAAACTCGA AGGGCGTCTC
ATCAATCACA TCCGGGACCG CCAGGGGAAA CCGCACAATC TAGTCGTACT GGCCCATCAT
GTTGAATGA
 
Protein sequence
MTTAPPQVPF NATLRDGRAV HIRMIEAGDN ERLIAFGAAL PENDWLHAEN DLRSPEVVAR 
LVNARDAEHW RQIVAVAPDG AIVAYASARQ LPGRSSHVAD IQLIVDKAWR RCGLGSVMAG
EIVAHARKLG VDKVFVDMVE EQTAGQAIFT RLGFKLEGRL INHIRDRQGK PHNLVVLAHH
VE