Gene Rcas_3883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3883 
Symbol 
ID5541389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5078461 
End bp5081109 
Gene Length2649 bp 
Protein Length882 aa 
Translation table11 
GC content59% 
IMG OID640895994 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001433937 
Protein GI156743808 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.045721 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTG CTCCGTTTCT CTCCGTGTTG CTGATTAGCG GCAGTGTCGC CTTCGTTCTG 
GCGCTTCTCT TTGTGCAACA GCGCGAAGAT AATGGCAGTG TCGCGTTTGC GCTGGTCATG
ATCGGCAGCG CCATCTGGTC GTGGGGATAC GCTTTGCAGA TCGGCGCCCG TTCGCCTGAA
CTCGCCCTGA TCGCGTTACG CATCAAGTAC ATTGGCATCC TCATCGTTCC GACGTGCTGG
CTCTGGTTTG CGCTGACCTA TACCGATAGC ATCGCTTCCC TGACCAGAAA ACAGGCGGCG
GCGCTAGCGT TCTTTCCTGT GCTGACATTT GTTGCCAACA TCACGAACGA CTGGCACCGT
TTCTTCTACC GGCGCGTCAA CCTCGCACCA CCCGGCGCAC TACCGATTGT GACCTTCGAC
TATGCTCCCT GGTACTGGAT TAATATCGTC TACTCGTACA GTCTGGTTCT GATCGGTCTC
TGGCTTCTCA TACGCTTCTG GGGGCGCGCG CTTCGTCTCC ACCGCATCCA GATCGCCGTG
CTGATCGGCG CCTTGCTCTT AATGACCGCC ATCAGTCTGA CCTTCTACAT CAACGAGCAG
TTTGTCAGCA TAGTGGACGT GACTCCGGTG TTGCTGGCTC TCAACGGAGT GCTCTTCTAC
CTCGCACTGT TCCGCCCCAG GCATCTCGAC GCCCGTCCAA TCGCCTATAC GCATCTGTTT
GAACAGTCGA GCGACGGAGT GCTGGTGTTT GATATGCGGG GCAAGGTGGT TGATTGCAAC
CCGGCGGCGC GTCGCATGCT CGGTCTGACA CATCCGGTGG GACAGTCGGT GCAATCCGTG
TTGCAACAGT ATCCTGAGCT GGCAGCCTCC TGCACAAGCG GCGTTGCGAA CCAACCCATT
CGTATCGAAC ACAGCGCACA GGTGATCGAT GCGCACATAG CGCCGTTGCG CGACCGTCGC
GGACAGCAGA CCGGCTCGGT GCTGGTGATG CGCGATGTGA CGAACTGGTG GCGGATGCAA
CAGGCGCTTG CCGAAAGCGA ATCCCGGCTG CGCGAGGAGC GCCGCCTGTT TATTGGAGGT
CCGACGGTTG TCTTTCGCTG GGAAGCGCGC GAACGATGCC CTGTTTCGTA TGTGTCGCCC
AATGTGCAGG AGCAGTTCGG GTATGCGCCC GAAGCATTCA CTGAGGGCGG GTTGATGTAT
CTCTCCCTGA TCCATCCTGA TGATCGCCAG CGCATCCAGA ACGAAATCGC CGACTATATT
CGCCGGAGTG TGAGCTGGTA TCGTCAGGAG TATCGATTTC GGCGCGCCGA TGGCGAGTAT
CGCTGGATCG ATGACTCGAC GATGGTGGTT TATAACGATC AGAACGAACC GATCTATTTC
CTCGGCTACA TTCTCGATGT CACCGAGCAG AAACGCGCCG AAGCCGAGCG GCTCGAAATC
GAGCGTCGGT TGCAGCAAAC GCAGAAACTG GAGAGTCTGG GATTGCTGGC AGGCGGAGTT
GCCCACGACT TTAACAATCT GTTGATGGCG ATCATGGGAA ACCTTGATCT GGCATTGCTG
GCGCTGCCCA AAACCTCAAC CGCTTTCCAG CACATCCGCA ATGCCATGCT GGCAACCCGT
CATGCCGCCG GGTTGACCCA GCAATTGCTG GCGTATGCGG GAAGAGGGGG CGATCGGCGA
ACCGACGTCG ATCTGACCAG GATCGTCGCA GGCATGGCAG ATATGCTGCG CGTGTCAGTT
GGCAGGCAGA CGCGCCTTGA ATTGCATCTT GACCCGTATC TTCCGGTTTT CCAGGCTGAC
CCTTCGCAAA TCCAGCAGGT CGTGCTCAAT CTGATCCTTA ACGCGGCTGA TGCGCTCCCG
GCGCATGGCG GGATTATCAG CGTGCGCACC GGCATGCGCT TCTGTGATGA GGCGCTACTG
GCAGCCAACC GCACAAACGA ACGTCTGTCG CCTGGCGAGT ACCTTGTGCT CGAAGTCGCC
GACACCGGCT GCGGCATGGA CGAAGACACC CAGCGTCGTA TGTTCGATCC CTTCTTCACG
ACTAAAGCGA TGGGAACCGG TCTGGGCATG TCGGCAGTGC TGGGCATTGT GCGCAATCAC
CACGGCGGAA TCGTGGTCGA CAGCGCTCCC GGATGCGGCG CTACGGTCAC CGTTCTGTTC
CCGCCTTCCT CGCCAGTACG GGAGAGCGAA CCGGTCAAAC CGGACGTATC GGCGGCGCCC
GAACCGATCA CTGTTCTCGT GGTGGACGAC GAAGCCGATG TGCGTGATGT GACGGCGCGC
CTTCTCACCC ACCTCAACTT TCGCGTCATT GCGGTCGCCA CCGGCGCAGA AGCCATCCAG
ACCCTACAAG CGCATGCCTC CGAAGTCGCA TGTGTGCTGC TCGACGCCAA CCTCACGGAT
ATGAGCGGCC TGGCGGTGCT GAAGGCGCTG CGCGCAATCG CGCCTCATAT CGCCATTGTG
GTGTCGAGCG GGTATTCGCA GCACGAGGTT CTGGCTCGCT TTGCCGAGAT GGCAATCGAG
GGATTCGTTC AAAAACCATA CCAGATAACG GAATTGTACG CTGCCATCCG ACGCGCATTG
CAACGGTCGG TTATGGCGAC CGCCCCTGAG ATACTTTCAG ACGCTGATGC AACCCCTGAA
GTGCAATAA
 
Protein sequence
MSLAPFLSVL LISGSVAFVL ALLFVQQRED NGSVAFALVM IGSAIWSWGY ALQIGARSPE 
LALIALRIKY IGILIVPTCW LWFALTYTDS IASLTRKQAA ALAFFPVLTF VANITNDWHR
FFYRRVNLAP PGALPIVTFD YAPWYWINIV YSYSLVLIGL WLLIRFWGRA LRLHRIQIAV
LIGALLLMTA ISLTFYINEQ FVSIVDVTPV LLALNGVLFY LALFRPRHLD ARPIAYTHLF
EQSSDGVLVF DMRGKVVDCN PAARRMLGLT HPVGQSVQSV LQQYPELAAS CTSGVANQPI
RIEHSAQVID AHIAPLRDRR GQQTGSVLVM RDVTNWWRMQ QALAESESRL REERRLFIGG
PTVVFRWEAR ERCPVSYVSP NVQEQFGYAP EAFTEGGLMY LSLIHPDDRQ RIQNEIADYI
RRSVSWYRQE YRFRRADGEY RWIDDSTMVV YNDQNEPIYF LGYILDVTEQ KRAEAERLEI
ERRLQQTQKL ESLGLLAGGV AHDFNNLLMA IMGNLDLALL ALPKTSTAFQ HIRNAMLATR
HAAGLTQQLL AYAGRGGDRR TDVDLTRIVA GMADMLRVSV GRQTRLELHL DPYLPVFQAD
PSQIQQVVLN LILNAADALP AHGGIISVRT GMRFCDEALL AANRTNERLS PGEYLVLEVA
DTGCGMDEDT QRRMFDPFFT TKAMGTGLGM SAVLGIVRNH HGGIVVDSAP GCGATVTVLF
PPSSPVRESE PVKPDVSAAP EPITVLVVDD EADVRDVTAR LLTHLNFRVI AVATGAEAIQ
TLQAHASEVA CVLLDANLTD MSGLAVLKAL RAIAPHIAIV VSSGYSQHEV LARFAEMAIE
GFVQKPYQIT ELYAAIRRAL QRSVMATAPE ILSDADATPE VQ