Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3883 |
Symbol | |
ID | 5541389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5078461 |
End bp | 5081109 |
Gene Length | 2649 bp |
Protein Length | 882 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640895994 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001433937 |
Protein GI | 156743808 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.045721 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCTTG CTCCGTTTCT CTCCGTGTTG CTGATTAGCG GCAGTGTCGC CTTCGTTCTG GCGCTTCTCT TTGTGCAACA GCGCGAAGAT AATGGCAGTG TCGCGTTTGC GCTGGTCATG ATCGGCAGCG CCATCTGGTC GTGGGGATAC GCTTTGCAGA TCGGCGCCCG TTCGCCTGAA CTCGCCCTGA TCGCGTTACG CATCAAGTAC ATTGGCATCC TCATCGTTCC GACGTGCTGG CTCTGGTTTG CGCTGACCTA TACCGATAGC ATCGCTTCCC TGACCAGAAA ACAGGCGGCG GCGCTAGCGT TCTTTCCTGT GCTGACATTT GTTGCCAACA TCACGAACGA CTGGCACCGT TTCTTCTACC GGCGCGTCAA CCTCGCACCA CCCGGCGCAC TACCGATTGT GACCTTCGAC TATGCTCCCT GGTACTGGAT TAATATCGTC TACTCGTACA GTCTGGTTCT GATCGGTCTC TGGCTTCTCA TACGCTTCTG GGGGCGCGCG CTTCGTCTCC ACCGCATCCA GATCGCCGTG CTGATCGGCG CCTTGCTCTT AATGACCGCC ATCAGTCTGA CCTTCTACAT CAACGAGCAG TTTGTCAGCA TAGTGGACGT GACTCCGGTG TTGCTGGCTC TCAACGGAGT GCTCTTCTAC CTCGCACTGT TCCGCCCCAG GCATCTCGAC GCCCGTCCAA TCGCCTATAC GCATCTGTTT GAACAGTCGA GCGACGGAGT GCTGGTGTTT GATATGCGGG GCAAGGTGGT TGATTGCAAC CCGGCGGCGC GTCGCATGCT CGGTCTGACA CATCCGGTGG GACAGTCGGT GCAATCCGTG TTGCAACAGT ATCCTGAGCT GGCAGCCTCC TGCACAAGCG GCGTTGCGAA CCAACCCATT CGTATCGAAC ACAGCGCACA GGTGATCGAT GCGCACATAG CGCCGTTGCG CGACCGTCGC GGACAGCAGA CCGGCTCGGT GCTGGTGATG CGCGATGTGA CGAACTGGTG GCGGATGCAA CAGGCGCTTG CCGAAAGCGA ATCCCGGCTG CGCGAGGAGC GCCGCCTGTT TATTGGAGGT CCGACGGTTG TCTTTCGCTG GGAAGCGCGC GAACGATGCC CTGTTTCGTA TGTGTCGCCC AATGTGCAGG AGCAGTTCGG GTATGCGCCC GAAGCATTCA CTGAGGGCGG GTTGATGTAT CTCTCCCTGA TCCATCCTGA TGATCGCCAG CGCATCCAGA ACGAAATCGC CGACTATATT CGCCGGAGTG TGAGCTGGTA TCGTCAGGAG TATCGATTTC GGCGCGCCGA TGGCGAGTAT CGCTGGATCG ATGACTCGAC GATGGTGGTT TATAACGATC AGAACGAACC GATCTATTTC CTCGGCTACA TTCTCGATGT CACCGAGCAG AAACGCGCCG AAGCCGAGCG GCTCGAAATC GAGCGTCGGT TGCAGCAAAC GCAGAAACTG GAGAGTCTGG GATTGCTGGC AGGCGGAGTT GCCCACGACT TTAACAATCT GTTGATGGCG ATCATGGGAA ACCTTGATCT GGCATTGCTG GCGCTGCCCA AAACCTCAAC CGCTTTCCAG CACATCCGCA ATGCCATGCT GGCAACCCGT CATGCCGCCG GGTTGACCCA GCAATTGCTG GCGTATGCGG GAAGAGGGGG CGATCGGCGA ACCGACGTCG ATCTGACCAG GATCGTCGCA GGCATGGCAG ATATGCTGCG CGTGTCAGTT GGCAGGCAGA CGCGCCTTGA ATTGCATCTT GACCCGTATC TTCCGGTTTT CCAGGCTGAC CCTTCGCAAA TCCAGCAGGT CGTGCTCAAT CTGATCCTTA ACGCGGCTGA TGCGCTCCCG GCGCATGGCG GGATTATCAG CGTGCGCACC GGCATGCGCT TCTGTGATGA GGCGCTACTG GCAGCCAACC GCACAAACGA ACGTCTGTCG CCTGGCGAGT ACCTTGTGCT CGAAGTCGCC GACACCGGCT GCGGCATGGA CGAAGACACC CAGCGTCGTA TGTTCGATCC CTTCTTCACG ACTAAAGCGA TGGGAACCGG TCTGGGCATG TCGGCAGTGC TGGGCATTGT GCGCAATCAC CACGGCGGAA TCGTGGTCGA CAGCGCTCCC GGATGCGGCG CTACGGTCAC CGTTCTGTTC CCGCCTTCCT CGCCAGTACG GGAGAGCGAA CCGGTCAAAC CGGACGTATC GGCGGCGCCC GAACCGATCA CTGTTCTCGT GGTGGACGAC GAAGCCGATG TGCGTGATGT GACGGCGCGC CTTCTCACCC ACCTCAACTT TCGCGTCATT GCGGTCGCCA CCGGCGCAGA AGCCATCCAG ACCCTACAAG CGCATGCCTC CGAAGTCGCA TGTGTGCTGC TCGACGCCAA CCTCACGGAT ATGAGCGGCC TGGCGGTGCT GAAGGCGCTG CGCGCAATCG CGCCTCATAT CGCCATTGTG GTGTCGAGCG GGTATTCGCA GCACGAGGTT CTGGCTCGCT TTGCCGAGAT GGCAATCGAG GGATTCGTTC AAAAACCATA CCAGATAACG GAATTGTACG CTGCCATCCG ACGCGCATTG CAACGGTCGG TTATGGCGAC CGCCCCTGAG ATACTTTCAG ACGCTGATGC AACCCCTGAA GTGCAATAA
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Protein sequence | MSLAPFLSVL LISGSVAFVL ALLFVQQRED NGSVAFALVM IGSAIWSWGY ALQIGARSPE LALIALRIKY IGILIVPTCW LWFALTYTDS IASLTRKQAA ALAFFPVLTF VANITNDWHR FFYRRVNLAP PGALPIVTFD YAPWYWINIV YSYSLVLIGL WLLIRFWGRA LRLHRIQIAV LIGALLLMTA ISLTFYINEQ FVSIVDVTPV LLALNGVLFY LALFRPRHLD ARPIAYTHLF EQSSDGVLVF DMRGKVVDCN PAARRMLGLT HPVGQSVQSV LQQYPELAAS CTSGVANQPI RIEHSAQVID AHIAPLRDRR GQQTGSVLVM RDVTNWWRMQ QALAESESRL REERRLFIGG PTVVFRWEAR ERCPVSYVSP NVQEQFGYAP EAFTEGGLMY LSLIHPDDRQ RIQNEIADYI RRSVSWYRQE YRFRRADGEY RWIDDSTMVV YNDQNEPIYF LGYILDVTEQ KRAEAERLEI ERRLQQTQKL ESLGLLAGGV AHDFNNLLMA IMGNLDLALL ALPKTSTAFQ HIRNAMLATR HAAGLTQQLL AYAGRGGDRR TDVDLTRIVA GMADMLRVSV GRQTRLELHL DPYLPVFQAD PSQIQQVVLN LILNAADALP AHGGIISVRT GMRFCDEALL AANRTNERLS PGEYLVLEVA DTGCGMDEDT QRRMFDPFFT TKAMGTGLGM SAVLGIVRNH HGGIVVDSAP GCGATVTVLF PPSSPVRESE PVKPDVSAAP EPITVLVVDD EADVRDVTAR LLTHLNFRVI AVATGAEAIQ TLQAHASEVA CVLLDANLTD MSGLAVLKAL RAIAPHIAIV VSSGYSQHEV LARFAEMAIE GFVQKPYQIT ELYAAIRRAL QRSVMATAPE ILSDADATPE VQ
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