| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3871 |
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| Symbol | |
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| ID | 5541376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5060091 |
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| End bp | 5062253 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895981 |
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| Product | methylmalonyl-CoA mutase, large subunit |
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| Protein accession | YP_001433925 |
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| Protein GI | 156743796 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain
[TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.949138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.194963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATG AGGTGCAGAC TACCATGGCT GGCGATGCAG CAGTACAACC GCTGTTCGAT
ATGTTCCCCC CCGCCACCTA CGACGAATGG CGCGCAGCGG CGGAAAAGAC GCTCAAGGGC
GCGCCGTTCG AGAAGCGACT GATCACCCGC ACCTACGAGC AGATCAGCCT TCAGCCGATC
TACAATGCCG AAGATATTGC ATCTTTACCG CACATCACCT CGCTCCCCGG CTTTGCGCCA
TTCGTGCGCA GCACGCGGAC GCTGGGCTAC GTCATTGGGC GCTGGGAGGT GTGTCAGGAA
TTGCCCTACC CCACGCCGCG TGAAGTCAAT CAGGCGGCGC ATGATGACCT GCCGCGCGGG
TTGACGGCAA TCAATGTGCC GCTCGACCGG GCGACACTTC ATGGTCTCGA TCCCGATGCT
GCACCGGTGG AATGGATCGG CGCTGGCGGC ATGTCGCTTG CCAGTGTCGA GGATGCCGCG
ACGCTGTGTG ATGGCATGGC GCTCGACCGC ACGCCGTTGC TCGTTGCTGC CGGCGCCGAT
GCGCTGCCGG TTGCGACGCT GATCCTCGCC GCTGCGGAAC GGTACGGTAT TGCGCACGAT
CAGGTGCAGG GGTGCATTGG CGCCGATCCG CTTGGCGCGC TGGCGATGTT TGGGACGTTG
CCGCTGTTGC TGGAGCGTTG CTACGATGCA ATGGCGCGCT GGACGGCATG GGCGCAAACC
CACGCGCCAC GCCTGCGGAC GATTATGGTA GCGACTCATG GGTACCACAA TGGCGGCGCG
ACGGTGGTGC AGGACCTGGC GTGCGCGCTG GCGACCGGGG TGGCGTATCT GCGCGCGATG
CAGGAGCGCG GGCTTGATAT CGATGGTGTT GCGCCGCGGA TGCAGTTTGC CTTCTCGATC
GGGTCACAGT TCTTTATGGA AATTGCCCGC CTGCGCGCAG CACGCATGCT GTGGGCGCGC
GTCGTGGCGG CATTCGGCGG CAATGACGAG TCGCAAAAGA TGCGCATTCA CGGGCGCACA
TCTGCCTGGA CGAAGGCGCG GTTTGATGCC TACAACAATA TGCTGCGCGC CACCGGCGAG
GCGATGGCAG GCGTGATGGG CGGCGTTGAT AGCCTGCACG TCAGCCATTT CGACGAGGCG
CTGGGACTGC CTGACGAGTT TTCCCGTCGG ATTGCGCGCA ATGTGCAGAT TATTCTCCAA
GAGGAGTGCA ATTTCATTCG CTTGATCGAC CCACCCGGCG GTTCCTGGGC GATTGAGTCG
CTGACCGATC AGGTGGCGCA GAAGGCGTGG GCACTGTTCC AGGAGATCGA GCGCCGGGGC
GGTATGGCTG ATGCGCTGGC TGCCGGGTTT CCACAATCTG CAATTGCGGC AACGCGCAAC
GAGCGTTTCT CTGCCATCGC ACAGCGCCGC GAGGTGATCA TCGGCGTGAA CATGTACCCC
AACCTGAAGG AAAAGCCGCT GACGGTGCGA CCGGTAGACC ACGCCGCCGT GCAGGCGGAA
CGCGCCGCTG ATGTGCGACG TGTGCGTCAG ATGCGCGACT CGCAGGCGTG CCAGGATGCG
CTCGATGCGC TGGTGAGTGC GCCGCAGGAT CGCCTGGTGG AACTGGCGCT GGCGGCAGCG
CGCACAGGCG CAACCCTCGG CGATCTCGCA GCGGCGCTGG CATCAGGCGA CACCACCGGT
CCAACCATCG AGTCGATCCC TGCACATCGT GCAGCGGAAC AGTTCGAAAC GTTGCGCATG
GCAGCGGATG CGTATGCTGC GCGCACTGGC GCGCGCCCGA AGGTCTTCCT TGCCAATATG
GGACCGATTC CGCAGCACAA GGCGCGCGCC GATTTTTCAA CCGGCTTCTT CGAGGCAGGC
GGCTTCGAGG TGATTGGCAA CGATGGCTTC ACCACAGTCG AAGAGGCAGC GCAGGCGGCG
CTGGCGTCGG GAGCGGGCAT TGTCACGATC TGTTCGACCG ACGACACCTA CCCGGAGATT
GTGCCGCCGC TGACAAACCT GATAAAATCG AATCGTCCAG ATATGACTGT GGTGCTGGCA
GGGTATCCTG CCGATCAGGT CGAAGCCCAT CGGGCGGCCG GGGTCGATGA GTTTATTCAT
CTTCGAGCGA ACTGTTACGA GACCCTGGTG CGGTTGCAGC AGTTGAAAGG AGTTGTCGCG
TGA
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| Protein sequence | MSDEVQTTMA GDAAVQPLFD MFPPATYDEW RAAAEKTLKG APFEKRLITR TYEQISLQPI
YNAEDIASLP HITSLPGFAP FVRSTRTLGY VIGRWEVCQE LPYPTPREVN QAAHDDLPRG
LTAINVPLDR ATLHGLDPDA APVEWIGAGG MSLASVEDAA TLCDGMALDR TPLLVAAGAD
ALPVATLILA AAERYGIAHD QVQGCIGADP LGALAMFGTL PLLLERCYDA MARWTAWAQT
HAPRLRTIMV ATHGYHNGGA TVVQDLACAL ATGVAYLRAM QERGLDIDGV APRMQFAFSI
GSQFFMEIAR LRAARMLWAR VVAAFGGNDE SQKMRIHGRT SAWTKARFDA YNNMLRATGE
AMAGVMGGVD SLHVSHFDEA LGLPDEFSRR IARNVQIILQ EECNFIRLID PPGGSWAIES
LTDQVAQKAW ALFQEIERRG GMADALAAGF PQSAIAATRN ERFSAIAQRR EVIIGVNMYP
NLKEKPLTVR PVDHAAVQAE RAADVRRVRQ MRDSQACQDA LDALVSAPQD RLVELALAAA
RTGATLGDLA AALASGDTTG PTIESIPAHR AAEQFETLRM AADAYAARTG ARPKVFLANM
GPIPQHKARA DFSTGFFEAG GFEVIGNDGF TTVEEAAQAA LASGAGIVTI CSTDDTYPEI
VPPLTNLIKS NRPDMTVVLA GYPADQVEAH RAAGVDEFIH LRANCYETLV RLQQLKGVVA
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