| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3820 |
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| Symbol | |
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| ID | 5541323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4991048 |
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| End bp | 4992982 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640895930 |
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| Product | hypothetical protein |
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| Protein accession | YP_001433876 |
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| Protein GI | 156743747 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02226] N-terminal double-transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.095196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTTC TGACGCCGCT GGCGCTTCTC AGTGCACTTG TTGTGGGTCC GCTGATCGTG
GCGATGTATC TGTTGAAACT TCGCCGCGAG GAACTGCGCG TCTCTTCGAC TTTCCTCTGG
CAGCGCATGG TGCGCGATGT GGAGGCAAAC GCGCCCTGGC AGCGCCTGCG GCGCAACTGG
CTGCTCTTCC TGCAACTGCT GCTGCTGCTC CTGTTGGCAA TCGCGCTGGC GCGACCCTTC
TTGCTTACCA CCGGCATCAG CGGGCGTAAC CTGATTATCA TCATCGATCG CTCGGCAAGT
ATGGCGGCGA CGGACGTCCC CCCCTCGCGG CTCGAAGCGG CGCGCCGCCA GGCGCAGACG
CTGGTCGATC AGTTGCCCGA AGGCGGGCGC GCGACGATTA TTGCCATCGG CGGGCAGATG
GACGTGCTTG CCGCTTCAAC GACGGATCGC CGCCAGATGT ATGATGCCAT TCGCGCGACG
ACGCTCAGCA TTGGTGGTCG TGGCGATTTG TCGCAAGCGC TGGCGCTTGC CACCGCTCTC
GCGGCGCGTG AACCGGATAG CGAGGTTGCC ATCATTTCCG ACGGCAATGT CGAGACTCCA
ACCGACATCC GTGTTCCGGC GACGGTGCGC TATTTTCCCA TCGGTCAACG CGCGGAGAAT
GTCGCTATCA GCGCTATGGC GCTGCAACCG ACACCCGCCG GACAGACGCT GTTTGTTCAG
GTCTCTGGCT ATGGCCCGGC GCCGGTTTCG CGGCGGCTTG ACCTCTACCT CGATGGCGCA
CTGTTCAATG CATACGAACT CAACCTCGGA CCAGACGGCA CTCCAGACGC TGTCCAGACG
GTGATCGTCG ATATTCCTGC TCAGGCGCGC GTTGCCGAGG CGCGACTCAG TCCGGCGCCC
AATGACGATT TCTTGCCCTC CGATGATCGG GCATGGGCAG TAAGTTCGAC GGGCGCAGGC
ATGGAGGTGC GTATTGTTGG TCCTGGCAAC CGCTTCCTCG AAACGGCGCT CTCGTTGTTG
CCCGGCATCA CTGCCACCAA AACAACGACC ACGACGGTTT CTGGCGATAC TGCACCACAG
GTGACAATCT TCGATCGGGT TGTGCCGGAA GCGCTGCCGA CCGGCAATCT GTTGTTCATT
GCTCCGATGC GCTCGACCCC CCTCTTTTCT GTGACCGGCA TGGTTGAATT TCCGCTGCTG
CGCCCGGCGC CGATCGTAAT CGAAGGGCAA GCGCCGCCAC TGCTGCGGAA TGTCAGTGTG
AGCGAGGTGA ATGTGCTGCG CGCGATGCGC ATCGAGACAG GCGTGTGGGC GCGCGCGCTG
GTCGAAGGAG ATGGCAGCCC AATGCTCCTG GCGGGGGAAC GCGAGGGGCG ACGCATTGTT
ATCCTGGCAT TTGCGTTGCA AGACTCCGAT CTGCCGCTTC AGGTTGCCTT TCCGCTGTTG
ATCTCGAATA TCATCGGGTA TCTCGCGCCG GGAAGCGGTC TGGAAGCATC GCAGATCGCT
CCCGGGCAAC CGCTGGTCGT GGCAGTTGAT CCCGCTGCCA CAGCGGTGCG TGTCGTTCGT
CCCGATGGGC GCGTCGATGC GGCACAGATT CAGGGTGGGC AGGCAATCTA TGCCGATACT
GATGCGCTCG GACCGTACCT CATCGAGCAG GTGCGCGATA ATCAGGCAGT CGAGCAGCGG
CGTTTCGCTA TCAATCTGTT TGCGCCGGAG GAGTCGCGCA TTGCACCGTC AGGTGAGTTA
CGCGTGCCAC AAGTCAGTGG TTTGCAACAG GCGGTGACCC GCGAGCAGGT GGGACGACAG
GAACTCTGGC GCTGGCTGGC GGCTGCGGCA ATCCTGATCG TTCTTATCGA ATGGCTGGTG
TACCAGCGCA GCAGTCTGGC GTACCTGCGG CAGCGCGTCC GTCTTGCGCT CGCAGCGCGT
CGCCATCCGG CGTAG
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| Protein sequence | MSFLTPLALL SALVVGPLIV AMYLLKLRRE ELRVSSTFLW QRMVRDVEAN APWQRLRRNW
LLFLQLLLLL LLAIALARPF LLTTGISGRN LIIIIDRSAS MAATDVPPSR LEAARRQAQT
LVDQLPEGGR ATIIAIGGQM DVLAASTTDR RQMYDAIRAT TLSIGGRGDL SQALALATAL
AAREPDSEVA IISDGNVETP TDIRVPATVR YFPIGQRAEN VAISAMALQP TPAGQTLFVQ
VSGYGPAPVS RRLDLYLDGA LFNAYELNLG PDGTPDAVQT VIVDIPAQAR VAEARLSPAP
NDDFLPSDDR AWAVSSTGAG MEVRIVGPGN RFLETALSLL PGITATKTTT TTVSGDTAPQ
VTIFDRVVPE ALPTGNLLFI APMRSTPLFS VTGMVEFPLL RPAPIVIEGQ APPLLRNVSV
SEVNVLRAMR IETGVWARAL VEGDGSPMLL AGEREGRRIV ILAFALQDSD LPLQVAFPLL
ISNIIGYLAP GSGLEASQIA PGQPLVVAVD PAATAVRVVR PDGRVDAAQI QGGQAIYADT
DALGPYLIEQ VRDNQAVEQR RFAINLFAPE ESRIAPSGEL RVPQVSGLQQ AVTREQVGRQ
ELWRWLAAAA ILIVLIEWLV YQRSSLAYLR QRVRLALAAR RHPA
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