| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3795 |
|---|
| Symbol | |
|---|
| ID | 5541297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4967038 |
|---|
| End bp | 4968096 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640895905 |
|---|
| Product | hydrogenase expression/formation protein HypE |
|---|
| Protein accession | YP_001433852 |
|---|
| Protein GI | 156743723 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0309] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR02124] hydrogenase expression/formation protein HypE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.717086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.875312 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAG GACTGAACTT CGAGGGATGG TCTTGTCCGT TGCCGTTGCG CGATCACCCG
AACATCGTGA TGGGGCATGG CGGCGGCGGT AAACTCTCGG CGGAACTGGT CGAGCATCTG
TTTCTGCCAG CATTTGCGGA TTCAGGTGCA GTCGATATGG GAGATGCGGC GCTCATTGCG
GTTGGCGGGG CGCACCTGGC GTTTTCGACC GACTCGTTCG TCGTGCGGCC CCTCTTCTTT
CCCGGTGGCA ACATCGGCGA ACTGGCGGTC AACGGCACGA TTAACGACAT CGCCATGCGC
GGCGCGCAGC CGCTTGTCCT CAGCGCCGGA TTCATTCTGG AAGAAGGGCT GCCGCTCGAT
CAACTCGCCG CAATTGCGCA CAGTATGGGT GTGGCTGCGC GCCGCGCCGG TGTCACCCTT
GTGGCCGGTG ATACCAAAGT CGTCGATCGT GGGCATGGCG ACGGCGTCTA TATCAACACC
AGCGGCTTTG GCATTGTGCC GGAGGGGATC GACATTGGAC CGACGCGGGC GCAACCGGGG
GATGCGATCA TCGTCAGCGG CACGATTGGC GATCACGGCA TTGCCATTCT CAGCGTGCGC
GAAGGGCTTG AGTTTGGCGC AACCGTCGAA TCCGACACTG CGCCGCTCAA CGGGCTGGTC
GCCGATCTGC TGGACGAAAC GCGCAATATC CACGTCCTGC GTGATCCGAC GCGCGGCGGA
GTGGCGTCGG CGCTCAACGA AATCGCGCGT GCCTCACAGG TCGGTATTGT GATCGACGAG
CGTAACCTGC CGGTGCAGGA CGCTGTGCGC GCTGCATGCG AATTGCTCGG CATGGACCCG
CTCTATGTGG CGAACGAGGG GAAACTGATT GCGATTGCGC CTGCTTCCGA CGCCGAACGC
CTGTTGGCGC GCATGCGCGC GCATCCGTTG GGACGGCAGG CCGCCATCAT TGGGCGTGTC
ACCGCTGACC ATCCGGGGTT GGTGGCGGCG CGCACCGGCA TTGGCGGGAC GCGCATTGTC
GATATGATGG TTGGCGAACA GTTGCCGCGG ATTTGCTGA
|
|---|
| Protein sequence | MSEGLNFEGW SCPLPLRDHP NIVMGHGGGG KLSAELVEHL FLPAFADSGA VDMGDAALIA
VGGAHLAFST DSFVVRPLFF PGGNIGELAV NGTINDIAMR GAQPLVLSAG FILEEGLPLD
QLAAIAHSMG VAARRAGVTL VAGDTKVVDR GHGDGVYINT SGFGIVPEGI DIGPTRAQPG
DAIIVSGTIG DHGIAILSVR EGLEFGATVE SDTAPLNGLV ADLLDETRNI HVLRDPTRGG
VASALNEIAR ASQVGIVIDE RNLPVQDAVR AACELLGMDP LYVANEGKLI AIAPASDAER
LLARMRAHPL GRQAAIIGRV TADHPGLVAA RTGIGGTRIV DMMVGEQLPR IC
|
|---|
| |