| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3684 |
|---|
| Symbol | |
|---|
| ID | 5541186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4820380 |
|---|
| End bp | 4821753 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640895803 |
|---|
| Product | nucleotidyl transferase |
|---|
| Protein accession | YP_001433750 |
|---|
| Protein GI | 156743621 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000826363 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGAA CTGCGATCCT GCTCGCGGCT GGCGCCGGTG TGCGTTTCTG GCCCTACAAT
GTGGTGCGCA ACAAATGCGC CTTTCCGATT GCGAATGTCC CCGCTATTCG CCGCCTGTCC
GACGACCTCG CCGCTCTCGG CGTCACCCGG CAGGTGGTCG TCGTCGGCGC GGGAGAAGCC
AGCATCCGCG CGGCGCTGCG CGGTGCCGCC GCCGAGATCG TCTTCGCGCG CCAGGCGCGA
CCCGATGGCA CGGCCGCCGC CGCGCTCCTC GGCGCTGCCA GCATCGACGA TGATCTCCTC
GTCGTCGCCG GCGACATCGT GACCGACCGG GCGAATCTCG CGGCGTTGCG CGACCGCTTC
GAGCGCGACC GCCCGCTTGC GGCAGCGCTC GTGCAACCCC TCGGCGCCGA ATCGTCACTC
GACTGGCTGA TCCCGTTTGT GGACAACGGC GTGTTGCACG GCGTCGAAGG GCACAGCCGC
GACGGCGACC GGCGCTTCTG CGGCGTGTAT GCCTTTCGTC CCGAAGCGCT CCCCTTCCTG
CGCGACAACC CCGCACTCGT GCGCGTCGGC GTCGGCGGGA TGCCGCCGGT CGACGCCGAG
ATCGTTCAGT CGCTCCAGAT GATGGTGGAC GAAGGGGAGC GCGTGGCGAC CGTCGATGCT
CCCGGCTTTC ACGTGGACCT CGACAAGCCG TGGCACATTC TCGAAGCGAA TGCGCGGGTG
ATTGACGCCA TGGCTGCGGC GCTCGACGGC GACCGGATCG ATCCAACGGC GCGCGTCCAC
GACGGCGCCG ACATTCGCGG ACGATTGATC CTCGGTCCTG GCGCAGAAAT CGGCAATCGC
GCGGTGGTGG AGGGCGACCT GTGGCTCGGC GCCGGCGCAA AAGCGCTGAA CGGCGCGATC
ATCCAGGGGC GCGCGGTCGT CGGGCGCGAA ACCGTGCTGC GCGACTACTG CCTGATCGGG
GCGCATTCAT CACTCGGCGC GCGCGGCATC TACGGGCATG GCGCCGAGTT CAGCGGCGTG
GCGCTCGATA CGGTCTACTG CTACCACTAC TGCGAAATCT GGGGCGTGGT TGGCATGGCG
GTCGATTTTG GCGCGGCGAC GGTCTGCGGC AATCTGCGTT TCGACGACCG CGCGACCGTC
TGGCGCATCA ACGGGCGCCC GGAAATCCCG ACGACCGCTG CCAATGCCGC ATACTTCGGC
GACTTCTGCC GCACCGGCGT CAACGCCATT ATTATGCCGG GGCGACGCCT GGGCGCCTAC
AGTATCTGCG GTCCTGGCGT CATTCTGCGC GACGACCTGC CCGACCGCGC GATGGTCATG
GTCGAGCAAC AGGTCACCAC CCGCCCCTGG GGACCGGAAC GGTACGGATG GTAG
|
|---|
| Protein sequence | MIRTAILLAA GAGVRFWPYN VVRNKCAFPI ANVPAIRRLS DDLAALGVTR QVVVVGAGEA
SIRAALRGAA AEIVFARQAR PDGTAAAALL GAASIDDDLL VVAGDIVTDR ANLAALRDRF
ERDRPLAAAL VQPLGAESSL DWLIPFVDNG VLHGVEGHSR DGDRRFCGVY AFRPEALPFL
RDNPALVRVG VGGMPPVDAE IVQSLQMMVD EGERVATVDA PGFHVDLDKP WHILEANARV
IDAMAAALDG DRIDPTARVH DGADIRGRLI LGPGAEIGNR AVVEGDLWLG AGAKALNGAI
IQGRAVVGRE TVLRDYCLIG AHSSLGARGI YGHGAEFSGV ALDTVYCYHY CEIWGVVGMA
VDFGAATVCG NLRFDDRATV WRINGRPEIP TTAANAAYFG DFCRTGVNAI IMPGRRLGAY
SICGPGVILR DDLPDRAMVM VEQQVTTRPW GPERYGW
|
|---|
| |