Gene Rcas_3621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3621 
Symbol 
ID5541123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4730839 
End bp4731594 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content59% 
IMG OID640895741 
Producthypothetical protein 
Protein accessionYP_001433688 
Protein GI156743559 
COG category[R] General function prediction only 
COG ID[COG0730] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTATG TTATCCTGAC GCTTCTGCTG TTCATCCTTT CGTTCCTCTC AGGAATGATG 
GGGCTAGGGG TCGCCTTCAT TGCGACGCCG ACGCTCGGCT TGTTTGGTCT GGATCTGAAG
CATGAAATCA TGCCGCTCTC GCTCTGGCTC AATGGCATTA CAGCAATCAC CGGCGCTATC
ACACTGGCGC GCAAGGGAAT GGTCGACTGG CGCACCGCGC TTCCGTTGCT GGCGATCACC
ACCCTTGTGG CGCCGATCGG GGTCTGGTTG CTTCAGTTTG TGTCAACCAC TACTATCTGG
TGGATTTATG TCGGCGTCCT CTTTTTCCTT GCATATCGCA TGGCCTTTCC GCCGCCGCAA
GACGACAGCG CGCCGCGTTC GATCGGTGAT GACGTTCGGG TAAAGGCCGG CGCGGCCAGT
GCGGCGATCG GCGTTTTTGC CGGCTTCCTC GGCGTTGGTC CTGGCTTTCT GATGATGCCG
ACATTGGTGT TGCTCGGTTA CAACGCGCGC ATTGCCGCTG CAACAAATGC GGTCATTGTG
ACGCTGCCGT CATTCTCGGC ATTCGCTGCC CATCTGATCG ATGCGCGCTT CGATTGGCTC
TTGCTCGGTC TGACATCGGT ATCCGCCATT ATAGGCGCTC AGTCCGGCGC CGCATTTATG
GCGCGCCGGG TGAAGAGTCT GACTCTGACG CGCATCTTCG CTGCGGCCCT GGTGTTGCTG
GCGCTGCAAC GGACGTGGAG CCTCGTCGTG GCATAA
 
Protein sequence
MSYVILTLLL FILSFLSGMM GLGVAFIATP TLGLFGLDLK HEIMPLSLWL NGITAITGAI 
TLARKGMVDW RTALPLLAIT TLVAPIGVWL LQFVSTTTIW WIYVGVLFFL AYRMAFPPPQ
DDSAPRSIGD DVRVKAGAAS AAIGVFAGFL GVGPGFLMMP TLVLLGYNAR IAAATNAVIV
TLPSFSAFAA HLIDARFDWL LLGLTSVSAI IGAQSGAAFM ARRVKSLTLT RIFAAALVLL
ALQRTWSLVV A