| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3567 |
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| Symbol | |
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| ID | 5541068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4657124 |
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| End bp | 4659151 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895686 |
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| Product | glycoside hydrolase clan GH-D |
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| Protein accession | YP_001433634 |
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| Protein GI | 156743505 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.879137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.341251 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACT CTGGATCAGG CGCCACGCCT GAGACATGGA CGCTCTCGAC AGACACCGTA
ACCATCACCG TGTCGCCGGC GGACGGGCGC CTGACCTGGA ATCTCAGCGG CGCAACTGGA
GGGCTTGACC TGTCATCGGT GACGGGGAGC GCTTTGCGTG TCGATGGACG GATGCCGCTC
TGGACGCAGA TTGTCGCTGT CGATGAGCAG TCCGTCGGAG ATGGCAGTCG CCTGTTGGCG
CTAACGCTCG ATACGGCGGA TGGCGGGCTG CGATTGATGC GCTGGTTTCA CCTGTTCGCC
GATCATCCGT TTGTGCGCAC CTGGGCGACG CTGGAGAATC GCAGCAGTGC GACGGTGCGG
ATCGATCAGT GCGATATTCT GACGCTGACG CCACACGCCC CGCCGCCACT CTATCTGTTC
CACGTCGAAC AGTTCAGTTG GAATTACCGG CGCGATTTCT TCAGTCAGCA CGAGGTCTGG
CTGCGGGTGG GATGCGCTCC GCACGAGATC CGCATGGGAT CGCACCCCGC CCACCACTGG
GGTCCCTCCA GTTGCGCGTG GTTCGCCCTG CGCGACGGTT CCCCCAACTG GAACGACGAG
CCGCCGGAGG GGGGGCGCGG CATGGTGTGC GGCATCGAGT TCAACGGCAA GAGCCGGTTG
CACGCCTGGG CAACCACCGA ACGGGTGAAT CTGGTGAGCC AGATCGATGA CCTGGCGCAC
CGCCTCGCAC CAGGCGCGAT CTTCGAGATT CCGGCGTTTT TCGTCGGGCG CTTCGAGGGG
GATTGGGACG AAGCCGGGTA TGTGACACAG CGTTTCGCCG AGGCGCATGT CCATCCCCCG
ATGCCCGACG ACCGCTACCC GTGGGTGCAG TACAATTCCT GGCGGTACGA GCAGAACATC
AACGAGGAGC AGCAACTGGC AGCCATCGAC CGCTGCGCGG AACTCGGCGT CGAACTTGTG
GTGATGGACC TGGGGTGGGC ACGTATGATC GGCGACTGGC GCCCCGACCC GATCAAGTTT
CCGCGCGGGC TGAAGCCGCT GGTCGAACGG GCGCACTCCT ACGGTATGCG GTTTGGCGTT
CATGTTGCGC TGGCGCAGTG CAACCCGGAA GCGCCGGTCG CCAGAGCGCA CCCCGACTGG
CTCATTCACA CCGGCAACGA TTACTATGGC GCCGGTCCGC TCTGCCTGGG ACACGAGCCG
TGCCGCCAAT GGCTCATCGA GCAGTTGATC CGGCTGGTGG ACGAAGAGGG GATCGACTAC
ATCATCCAGG ACGGCGAGGA TATGGTGAAG CGGTGCGAGC GCAGCGATCA CACGCATGCA
CCGGGCGACA GCAACTACGC CAACTCACAG TATGGGCTGG ACATCGTCAT CGAATCGCTG
CGCCGCGCCT GCCCACACCT GGTGCTCGAA AATTGCGAGG ACGGCGGATG CATGATGACC
TATAAAATGG CGCGTCTGTA CCATACCAGC ATCACGGTGG ACAATACTTC GTCCTATGCC
ACACGACAGG GGGTGTACGG CGCGTCTTAC CCGTTCTCGC CGCGCTATAG CGTGCGCTAC
ATGCAGGACG ATCCCTCGCC CTACACCCTG CGCAGTTCAA TTTTCGGCGG GCCTCTCATC
CTGATGCAGC GCGTCACCGA GTGGAACGAA GCGCAGATGG CGGAAACCAG GCGTGCTATC
GAACAATATA AAGCATTGCG CCATCTCATC CGTTCGGCGA AGATCATCCA TCTGAAAGCG
CCGCTGCACA ACATCGATGG TCTGGGATGG GGATGGGACG CTCTCCAGGC AGTGGCGCCC
GACCAATCCC GCAGCGTCGT GATGGTATAC CGCGCGCAGG GAGATGTCGC CGAGCGCACC
TTCAAGCCGC GCGGTCTGCT CCCAAACGCG GCGTATCTGG TCCGCTACGT CGATAGCGGG
CGCACCCTGC AACGCACCGG CGCCGAACTG GAGCGCGACG GGATCACCGT GGCGCTAGAA
GAGTTCAGTT CAGAGCTCGT TATGATAGAG GTGGAGGGTG AAAGGTAG
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| Protein sequence | MTHSGSGATP ETWTLSTDTV TITVSPADGR LTWNLSGATG GLDLSSVTGS ALRVDGRMPL
WTQIVAVDEQ SVGDGSRLLA LTLDTADGGL RLMRWFHLFA DHPFVRTWAT LENRSSATVR
IDQCDILTLT PHAPPPLYLF HVEQFSWNYR RDFFSQHEVW LRVGCAPHEI RMGSHPAHHW
GPSSCAWFAL RDGSPNWNDE PPEGGRGMVC GIEFNGKSRL HAWATTERVN LVSQIDDLAH
RLAPGAIFEI PAFFVGRFEG DWDEAGYVTQ RFAEAHVHPP MPDDRYPWVQ YNSWRYEQNI
NEEQQLAAID RCAELGVELV VMDLGWARMI GDWRPDPIKF PRGLKPLVER AHSYGMRFGV
HVALAQCNPE APVARAHPDW LIHTGNDYYG AGPLCLGHEP CRQWLIEQLI RLVDEEGIDY
IIQDGEDMVK RCERSDHTHA PGDSNYANSQ YGLDIVIESL RRACPHLVLE NCEDGGCMMT
YKMARLYHTS ITVDNTSSYA TRQGVYGASY PFSPRYSVRY MQDDPSPYTL RSSIFGGPLI
LMQRVTEWNE AQMAETRRAI EQYKALRHLI RSAKIIHLKA PLHNIDGLGW GWDALQAVAP
DQSRSVVMVY RAQGDVAERT FKPRGLLPNA AYLVRYVDSG RTLQRTGAEL ERDGITVALE
EFSSELVMIE VEGER
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