| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3384 |
|---|
| Symbol | |
|---|
| ID | 5540883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4413042 |
|---|
| End bp | 4415006 |
|---|
| Gene Length | 1965 bp |
|---|
| Protein Length | 654 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640895502 |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| Protein accession | YP_001433452 |
|---|
| Protein GI | 156743323 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
|---|
| TIGRFAM ID | [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.31001 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGA TTATCTGGCT GATACCTGCG TTTCCTCTCC TTGGTTTTCT GCTCAACATG
CTGATGGTGC GCCGGGAGCG TGATGCCGGC ATGCTTGCCG CCGCCATGGT GGGATTGTCA
TTTGTTGCGA CAATCGTGGC GATGGCACTG CTCGAAAGCG CGCCTGCCGA CGCCAAACGG
TTGACCTGGA CGCTGTGGGA ATGGATCAGC ATAGCGGATT TTCGCGTCGC GTTCGGGTTG
CTCTTCGACC CGCTCACTGC GGTGATGGCG CTGCTGATCA CCGGCGTCGG CGGGCTGATC
CACATCTATT CCATCGGCTA CATGCACGGC GATGTGCGCC CGGTCCGGTT CTTCGCTTTT
ATGAATCTGT TCGTCTTTGC CATGCTGATG CTGGTGATGG CGGACAATCT GTTGCTGCTG
TTCCTCGGTT GGGAAGGCGT TGGCTTGTGT TCGTTCCTCC TCATCGGGCA CTATTTCGAC
CGCCGCACCG TGCCGCCAGG CATCAACCCC TCTGACGCAG CCGTGAAAGC CTTTGTGGTC
AACCGCGTCG GCGACGCGGC GATGCTGGCG GCGCTGTTCG CCATTGTTAC CAATGTCGGC
ACGCTGTCGT TCTACGATAA TCCGCAGCTT GGCATCGGCG GCTATCTGGA TCAGGCGATC
ATCATTGCAG GTGAGACCGT CGATCTTGGC GCATTCGGGC AGTTGCCGCT CATTGCGGGG
ATCACCCTGC TGATGCTGGT TGCTGTGGCG GGGAAATCGG CGCAATTGCC GCTCTTCACC
TGGTTGCCCG ATGCAATGGC GGGTCCTACG CCGGTGTCGG CGTTGATCCA TGCGGCGACT
ATGGTGACAT CCGGGGTTTA CCTGATCGTG CGCAATCATA CGTTGTTCGA CCAACCGGCG
TCGGCGGCGC CGTGGGTGCT GGTGATCGGT GTGATGACTG CGTTCATCGG CGCAACAGCA
GCCGTGGCGC AGCTCGATAT CAAGCGCGTG CTGGCGTATT CGACCGTCTC GCAACTTGGC
TATATGGTCG CTGCCGTGGG GATGGGGGCG TATGTTGCGG GTATGTATCA TCTGCTCACC
CACGGTCTGT TCAAGGCGCT GCTCTTTCTG GCAGCCGGTT CGGTGATCCA CGGCATCGGC
GGGCACCAGG ATATGCGGCG CATGGGGGGG TTGCGCGATA ATCTGCCGAT GACCTTTCGC
CTCTACCTGA TCGGCGCGCT GGCGTTGAGC GGTATCTTTC CGCTGGCAGG GTTCTGGAGC
AAAGACGAAA TCATCGCTCA CGCCTGGTTC GATGCGCGCA GTCCGCTGGC AGCGATCATT
CTGATTCTGA CCTCGGCAGT CACGGCGTTC TATATGGGTC GTCAGATCGG CATGGTCTTT
TTCGGGCGGC CACGTGATCC GGCGATGCAC GCGCACGAGA GCGGCGCCAT GATGCGCTGG
CCCATGGTTG CGCTGGCAGG CGGCGCCGTT ATTGGCGGGT TGATCAATTT CCCTGGATTG
CACTGGCTGA ACAGTTATCT GCGTCCGGTG CTCCAGGAAC CGGAGGTTAT CTATACGTTC
GGCATGGGGA TTCTTGCAAC GATCACGACG CTGGTGAGCG CCGGCGCCGG GTACCTGGGC
TGGAAAACCT ATGCGCGCGA CCTGGAGCCG CGCATCCGTA TTGGTAAGGA CGATCCGGCA
TTCCGGTATC TCGGCGATCT GTGGCGTGGC ATGGAGATTG GCTGGGGTCT CGACTGGCTC
TACCAGCGGG TTTTCGTCCG TCCCTATCGT ACAGCGTCGG TGTTCCTCAG CCAGGTGGTT
GATCGCGAGG GTATTGATGG CGTCCTGGTC GGTGGCACAG CGCGCGGACT GATGCGGTTG
GCGCAGGGCT TGCGTCTCGT GCAGACCGGG TATGTTCGCA CATACGCTCT GATGTTTTTG
GTGGGCGTGA TCATTGTGGT CGCATTCTTC GCATTGCGCG GTTAG
|
|---|
| Protein sequence | MNWIIWLIPA FPLLGFLLNM LMVRRERDAG MLAAAMVGLS FVATIVAMAL LESAPADAKR
LTWTLWEWIS IADFRVAFGL LFDPLTAVMA LLITGVGGLI HIYSIGYMHG DVRPVRFFAF
MNLFVFAMLM LVMADNLLLL FLGWEGVGLC SFLLIGHYFD RRTVPPGINP SDAAVKAFVV
NRVGDAAMLA ALFAIVTNVG TLSFYDNPQL GIGGYLDQAI IIAGETVDLG AFGQLPLIAG
ITLLMLVAVA GKSAQLPLFT WLPDAMAGPT PVSALIHAAT MVTSGVYLIV RNHTLFDQPA
SAAPWVLVIG VMTAFIGATA AVAQLDIKRV LAYSTVSQLG YMVAAVGMGA YVAGMYHLLT
HGLFKALLFL AAGSVIHGIG GHQDMRRMGG LRDNLPMTFR LYLIGALALS GIFPLAGFWS
KDEIIAHAWF DARSPLAAII LILTSAVTAF YMGRQIGMVF FGRPRDPAMH AHESGAMMRW
PMVALAGGAV IGGLINFPGL HWLNSYLRPV LQEPEVIYTF GMGILATITT LVSAGAGYLG
WKTYARDLEP RIRIGKDDPA FRYLGDLWRG MEIGWGLDWL YQRVFVRPYR TASVFLSQVV
DREGIDGVLV GGTARGLMRL AQGLRLVQTG YVRTYALMFL VGVIIVVAFF ALRG
|
|---|
| |