| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3294 |
|---|
| Symbol | |
|---|
| ID | 5540792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4281642 |
|---|
| End bp | 4283270 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640895412 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433363 |
|---|
| Protein GI | 156743234 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.749446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTACC TCTTGGCTGC CGAGGCCGAT AAGATTCAGG ATTTCATCTT TCGCTCTTCG
CGCTTGCGCG AAGTGGTCGG GGCGAGTCAG TTGCTGACTC GCTTCTGCCG TAGCGTCGAA
GATACCGTGG CGAAGCAGTA CAACGGTCAG GTTGTAGTCA ATGACGGCGG TAGTTTCCGG
GTGATCTTTA ACGATCGAAA TGACGCGGTT GCTTTCGGCG TCGATCTGGC TGAACGCTAC
CGGCTGGCGT TGGGTGGCAG CCTGACAGTT GCTGAGCCTG TAGCGATGAA CAGTGATTTC
CGCACGGCCA ATGATGAAGC CGGTACAAAG TTGCGCTGGG CGAAGAGTCA TCGGCAGGGA
GTAGTAGCCG AAGTGCATAT GCCGTATGTC GCATTCTGCG AGTCGTGTGG CGTGGGGTTG
GCGGAACGGC GTGATCGGCT GGCGGGAAGG AACGCTTCCC GCCACAGGTA TCTGTGTGCG
ACCTGTCAGA TCAAAGCAAC CGAGCGTGAT CGTGGTCTGC GCGAATTCCT TGGTGGAGTG
TACGATCCTT ATGCTAAGGA AGCGGCAATT CCTGCCCACA TTGAACCCGA TTGGCCCGAA
GACGCTGATG CTATTGCCGT TTTTGACCTG AGTAAACGAA ACTACGTAGC CTATTTGGTG
GCCGACGGCA ACGGTATGGG TCAATTATTC GGCAGTTGTG ACCAGGGGCA GCTCCAGAAC
CTTTCGCAAG GTCTATCAAC GGTGCTGAGT GAGAGTCTGG CCGTTCCGAT GATTGAGTTC
CGCAAGCAAG TTCCGGCACA GGCGACGATG ATGCCGATGC TTCCGCTCAT TCTCGGTGGT
GACGATCTCT TTGCGCTCAT CCCGGCGTCG TATGCGCTCG ATATTGCCCG TCGCTTCTGC
CTCGAATGGG AAAAGCGCAT GCAAAATCTG ATAAATAAGA TAAATCTGTG CAATGTGCCT
CGCCCGACGA TTGCCGCGGC AGTGGTGATT TGCAAGCGTA CCTATCCGTA TGCGCTGGCC
CATCGCCGGG CCGAAGCTTG GCTGGAGGAT GCCAAGCGCC AGAGCAAATT GCTGGCTGCC
AGGACGAACG AGCATCTATC GGCGGTCAAT TTCGAGGTCA TTTTGGGCAA TCGGTTGGCG
GGTATGGCCG AGGCAGACGG TGATCAGGTC ATCCGGCGCT CGTTACGTCC GTATTGGGTC
GCAGAGCACG ATCTCTCGGA AGACGCCTTG CTGCGCGGGA TCGACCTCAA GCATCTGCTG
GCGCAGCGCT ATGCCCTGAA AGATCTTCCC CGGAAGCGTC TGGCCGAATT GCGCCGTTGT
TTTGCCGAGG TGCAGACGGA TATTCCTGTG CAGCAGCGTA CCCAAAACTT AGAACGGTGG
ACGCAGCATC GGCTCGAATG GATTTTGGAG CGATTGAGTG CAGTTTCACG TTCGGCGGTA
GTCGATGCGC TTAAGGTGCT GGGCAAGCCC AAGAACAACG GGAATGGCGC TCACTATTGG
CGCAGTATCA CGCGCGATAA CCGAGATGTG GTCGCCCATG GCATGCCCGA TCTGCTGGAA
GTTTGGGAGT TTGCGCAGGA GTTGAGTCAT AACCCCGACG ATTATGAACC GCAGGAGGAC
GAGGCATGA
|
|---|
| Protein sequence | MRYLLAAEAD KIQDFIFRSS RLREVVGASQ LLTRFCRSVE DTVAKQYNGQ VVVNDGGSFR
VIFNDRNDAV AFGVDLAERY RLALGGSLTV AEPVAMNSDF RTANDEAGTK LRWAKSHRQG
VVAEVHMPYV AFCESCGVGL AERRDRLAGR NASRHRYLCA TCQIKATERD RGLREFLGGV
YDPYAKEAAI PAHIEPDWPE DADAIAVFDL SKRNYVAYLV ADGNGMGQLF GSCDQGQLQN
LSQGLSTVLS ESLAVPMIEF RKQVPAQATM MPMLPLILGG DDLFALIPAS YALDIARRFC
LEWEKRMQNL INKINLCNVP RPTIAAAVVI CKRTYPYALA HRRAEAWLED AKRQSKLLAA
RTNEHLSAVN FEVILGNRLA GMAEADGDQV IRRSLRPYWV AEHDLSEDAL LRGIDLKHLL
AQRYALKDLP RKRLAELRRC FAEVQTDIPV QQRTQNLERW TQHRLEWILE RLSAVSRSAV
VDALKVLGKP KNNGNGAHYW RSITRDNRDV VAHGMPDLLE VWEFAQELSH NPDDYEPQED
EA
|
|---|
| |