| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3280 |
|---|
| Symbol | |
|---|
| ID | 5540778 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4259222 |
|---|
| End bp | 4261204 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895398 |
|---|
| Product | ATPase central domain-containing protein |
|---|
| Protein accession | YP_001433349 |
|---|
| Protein GI | 156743220 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.940995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.620187 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTCG AACCATATCG CCCTGGCGTC GACCCGCGCT ATCGCGATGA ACTCGATCGT
GAACTCGATC AGAAGATCGA TCAGGCGCTC CATCGCTGGC CCTGGAAGGT GCGACGCTTC
ATCTGGCGCG TGTTGATCGC CATCGCTGCA ATCTGGCTGG TGATCAATCT GGCGCCGCGC
GCCGTTGAGT TCGTGATGAC GAACGATATG GGCGCCGCGA TTATTCAGGT ATTGCTGATC
GGCGCCTATC TGTTCTTCTT CATCGGCTTC CAGTTCTTCT TGATGTTCTA CTTCATGGGG
CGCACCCGCA TCTACTGGCT CAAACCGGGC GAGACGGGCA TCGGCTTCAA AGACTACAAG
GGGAACCCGG AAGTGCTGGA AGCGGCGCGC CGAATCGTGA CGCTGCTCAA GGGCGCAAAA
GAGTTCAAGG AAATGGGTGG CGAAGTCACG CGCGGCGTGC TGCTGATTGG ACCGCCTGGA
ACCGGGAAAA GCTACATGGC GCAGGCAGTG GCGACTGAAG CAGGCGTGCC ATTTGGCTAT
CTGAGCGCTC CGTCGCTGAC ATCCGCCTGG ATGGGTATGG GCAACATGAA AGTCATGCTG
CTCTACCGCA AGGCGCGCAA ACTGGCGCGT GAGTATGGCG CCTGTATCCT CTTCATCGAC
GAAATCGATG CGATCGGTAT GGCGCGCAGC CCGAATCTCG CTGGTCAGGG TGCAATGGGT
ATGTCTCCCG ATACCAGCCA CGGTGGTCGC GCCAATGTGG TGATGGGCAT GGGCATGGGG
ATGGGCGCGG GAAGTGGTCT GCTCAACGAA CTACTCATTC AAATGGACCC GCCGCCCCAT
GAGCAGTCGC TGAGCGGAAA GATTCTGCGC TTCTTCGGTT TGCGCCGCAA AAAGGCAGAG
ATGCCACCCG TGTTGACAAT GGCGGCGACA AACCTGGCGG AGACGCTCGA CGCAGCACTG
CTGCGACCAG GTCGCTTCGA TCGCAAAATC GCCGTTGATC TTCCCGATGC CGATGGGCGT
AAGGAAATCA TTGAGTACTA CCTGGCAAAG GTTAAGCACG AACCAATGCC CATTGATCGC
ATGGTTTCCG ATACCATCGG GTACTCGCCG GTTGCGATCA AGTTCGTGAT CAACGAAGCA
GTCATCCATG CACACTTCGA CGGTCGCTCG GCGATTAACT ACTGGGACTT TACCCGCGCG
CGCGAGACGC ACGAATGGGG TCTGCGCCAA CCGATTCGGA ACATGTCGTA TGAGGAGCGC
CGCCGCCTCG CGTACCACGA AGCAGGTCAT GCATATGCCG CTGTCAAACT GCTGCGCAAA
GAGCGTCTGA CGAAAGTGAC GATTGTGCGC CATGGCTCGG CGCTTGGCTT TGCCGCCTGG
AAGCCGGAAG AGGAAATTCA TACCCGCACG AAAGACGAAC TGCTCGACCG GATCAAGATT
TCGCTCGCCA GTCGTGCCGC CGAAGAAGTC TTCCTCAACA TTCAGATGAG CGGCGTCACC
AGCGACCTGC AAAGCGCCAC CGGTCTGGCG ACGTTTATGG TCGGCGCGTA TGGCATGGAC
AATAGCCTCT ATTCGCACCT GACTTTCGGG ATGCAAGGGC TGGCAAGCCC TGATATCAAG
ATGCGCGTGG AGGCGATTCT GAACGAGCAG TATCGCCAGG TGAAAACACT GATCGAAAGC
AACAAAGAGG CGGTCATCGC TATTGCTGAG GCATTGATCC TTCGCAATGA ACTGACCGAC
ATCGACGTGA ACGAAATCCT GGCGCGTGTC GAAGCCGAGC ATCCGTTCAC CGACCCGCGC
ACGGCGCAGC GCCAGCAGTT CGGGTTTGTC ACTACCCGCG CGCTGCCCGA ACCGGTCAGC
GTCAGTCGCC GCTACACCGG TGCGCGTCGT CCAGTCGATG CCGTCAATGT GCCTGCCGCG
ACGCAACCGA CATCCTCCCA GCAACCGCAG GCGTCGGCTG AACAGGGTGA AGAGCAGTCA
TAA
|
|---|
| Protein sequence | MALEPYRPGV DPRYRDELDR ELDQKIDQAL HRWPWKVRRF IWRVLIAIAA IWLVINLAPR
AVEFVMTNDM GAAIIQVLLI GAYLFFFIGF QFFLMFYFMG RTRIYWLKPG ETGIGFKDYK
GNPEVLEAAR RIVTLLKGAK EFKEMGGEVT RGVLLIGPPG TGKSYMAQAV ATEAGVPFGY
LSAPSLTSAW MGMGNMKVML LYRKARKLAR EYGACILFID EIDAIGMARS PNLAGQGAMG
MSPDTSHGGR ANVVMGMGMG MGAGSGLLNE LLIQMDPPPH EQSLSGKILR FFGLRRKKAE
MPPVLTMAAT NLAETLDAAL LRPGRFDRKI AVDLPDADGR KEIIEYYLAK VKHEPMPIDR
MVSDTIGYSP VAIKFVINEA VIHAHFDGRS AINYWDFTRA RETHEWGLRQ PIRNMSYEER
RRLAYHEAGH AYAAVKLLRK ERLTKVTIVR HGSALGFAAW KPEEEIHTRT KDELLDRIKI
SLASRAAEEV FLNIQMSGVT SDLQSATGLA TFMVGAYGMD NSLYSHLTFG MQGLASPDIK
MRVEAILNEQ YRQVKTLIES NKEAVIAIAE ALILRNELTD IDVNEILARV EAEHPFTDPR
TAQRQQFGFV TTRALPEPVS VSRRYTGARR PVDAVNVPAA TQPTSSQQPQ ASAEQGEEQS
|
|---|
| |