| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3238 |
|---|
| Symbol | |
|---|
| ID | 5540736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4207510 |
|---|
| End bp | 4208370 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895359 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001433310 |
|---|
| Protein GI | 156743181 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA CAAGGCAGGA TGAAAGATTT CGGCTGCAAC GCCGCTTACA GAATCAGGCG
GTCGAACTGG CAGTGAACAG CCGCTGGGAA GAGGCGGTGC AGGTCAATGA AAAATTGATC
GGACTGGCGG AAACGACCGA AACCTACAAT CGTTTGGGGA AAGCGTACTT CGAGTTGGGG
CGTCTCACGG AAGCGCGCGA CGCCTATCGC AATGCGCTGC GCCTCACGCC GAACAACCGC
ATTGCGCGCC GGAACCTCGA ACGCATTGAG GAACTGCTGG CAAAATCAGC ATCCCTTTCT
ACCGTTTCGC TGAAAGCCGG GCGTCAGCTC GTCGACCTGC GCCTGTTTGT CACCGAAGTC
GGAAAAACGG CGCTGACATC GCTGATCGAC GTTCAGCGCG GGCCGGCGCT GGCAGCGATT
GTCACCGGTG AGAAGGTGGA GTTGCGTCCC GAAGGACGCG GCGTGGCGGT CTACGACACA
TCCGGCGCGC TGATCGGGCG CATCGAACCG AAACTGGCGC AGCGCCTGAA CGAACTGATG
GCCGGCGGGA ATCGATATAT CGCCGCAGTC GCGCACATCG ACGGGCGCCA GGTGCGCATT
ATTATTCGTG AAACCTACCA GGCGCCATCG CAACGTGGGC GTGTCTCCTT CCCCGGCAAG
CTGAGCGAGA GTGCGCTCCG TGGCGCGTTC ATCAGCGGTG CGCAGTTCGA CGAATTCGGC
GAAGAATTGC TCGAAGAGGA GGAAGGGGCT GAGGTGCGCG AGGACGTGGA CGAAGAAGCC
TTTGGCGGCG AAGACGAAGA ACTTGGGCTG GAGGAAATCG AACCGGACAT TGGTGATGAT
GAGGATTTGA TCGAAGAATA G
|
|---|
| Protein sequence | MTLTRQDERF RLQRRLQNQA VELAVNSRWE EAVQVNEKLI GLAETTETYN RLGKAYFELG
RLTEARDAYR NALRLTPNNR IARRNLERIE ELLAKSASLS TVSLKAGRQL VDLRLFVTEV
GKTALTSLID VQRGPALAAI VTGEKVELRP EGRGVAVYDT SGALIGRIEP KLAQRLNELM
AGGNRYIAAV AHIDGRQVRI IIRETYQAPS QRGRVSFPGK LSESALRGAF ISGAQFDEFG
EELLEEEEGA EVREDVDEEA FGGEDEELGL EEIEPDIGDD EDLIEE
|
|---|
| |