| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3132 |
|---|
| Symbol | |
|---|
| ID | 5540628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4057936 |
|---|
| End bp | 4059576 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895251 |
|---|
| Product | polymorphic membrane protein |
|---|
| Protein accession | YP_001433204 |
|---|
| Protein GI | 156743075 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat
[TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCAC CGACCTGTAT GCGTTGCTCT GTTGTGCTGT TGACCCTGGT CATGATCGCA
GCATTGTTGA CGGTTGAGCC GGCGACTGCT GCACCACAGA CGTTCACCGT CACCAAAACA
GCCGATACTG CCGATGGCGT GTGTGGCGTC GATTGTTCGC TGCGCGAGGC GATCAGCGCC
GCCAATGCCA ATCCCGGTGC AGATACGATC ATACTCCCTG CCGGAACCTA TCCGTTGACG
CTCACAACCA CGCTGGAAGA TAACAACGCC GATGGCGACC TTGACATCCG TGACGATCTG
ACGCTGATCG GCGCCGGCGC TGCGACAACG ACTGTGATTG CTGTCAGCGG CGATCGCGTG
GTTCACCTTC TTGCTTCAGC TACGGTCACG ATCACCGGTG TGACCTTGCG CGGCAACGGC
GATGTTCCCG GCAGTGGCGG CGTTATCCTG GTGGAACCGG GGACAAGCCT GATCCTGCGC
GACAGCGTGG TTCGTGACGG TCGGGCAGGG CGTGGCGGCG GCATCGAAGT GCTCGGCAAC
GGGGTGAATC CAGCCGGCGC CAACGCCACG ATTGAGCGGG TGACGTTCAC CGGCAATCGG
GCGGCCAGTC TTGGCGGCGC GCTGAGCGTC TTCAATGGCG GCGACGTATC GCTGACCAAT
GTGACGATCA CCGGCAACAG CGCGGGAAAC AGCGGCGGCG GCATCAGCGT GTCGCTCGAT
CAGGCGCTCA TCAACCCGCC GAAAAGTGCT GCAACACTGA ATAATGTCAC GATTGTGCGC
AACACTGCCG ACGATGATCG GAACGACATC GGCGAAGGCG GCGGCGTTTC GGTGCGTGTT
GATGCGCAGG TGATCAACCA GGTGCGTCTG CGCAATACGA TCATTTCCGA TAATGCCGAC
CTCAGTCCGA CGCCGGCGCG GGTCAATCCC GATTGTTTCA ATATCCTCGA ATCTCTTGGG
TATAATCTGA TCCATCGCGA CACCGGCTGC ACGATTGTTG GCGCGCTGAG CGGCAATATC
ATTGGTGTCA GCGCGCAGCC CGGCGTCTTG CTCAATAACG GGGGATCAAC GCCAACGGTT
GCGTTGCAGA GCGGTAGCCC GGCTATCGAT GCTGGCGACC CGGCGGTTGG GAGTTCATGC
GCCGCAACCG ATCAGCGTGG CGTGGCGCGC CCAATCGATG GCAATGGGAA TGGTCTGGCG
ATCTGTGATA TGGGTGCGTA TGAGGCGCCT GTGCCGGGAG ATGCTGACCT CTCGGTGATC
CTGACTGCAC AACCAAATCC CGTTGAACCT GGTGGTGTGC TGACGTACTC GATCATCGTA
CTGAATGCTG GTCCCGGCGC AGCGGAAAGC GTGCAGGTGC AGTTTACGCC GCCGGCGGGC
GCGACGAGCC TGCAAATCGA TGGAATAGGA TGGGATTGCA TCGTTGCCGG TGTCGTCACA
TGCGGGCGTG GTGCGCTTGC GGCAAGCGGT GTCGCGTCAG CGCTTACCAT TGGGCTGCGG
GTTCCATCTC CTGGCGGCGT AAGTACGGCG ACTGCCACAG TTTCATCGGC GCAGCGCGAC
CCGGCGCCGG TAAACAACAC GGCAACCCTC AGCGTCTTTC GCGGTAGACC GTATCTCTGG
CTGCCGCTCA TTAAACGATA A
|
|---|
| Protein sequence | MRSPTCMRCS VVLLTLVMIA ALLTVEPATA APQTFTVTKT ADTADGVCGV DCSLREAISA
ANANPGADTI ILPAGTYPLT LTTTLEDNNA DGDLDIRDDL TLIGAGAATT TVIAVSGDRV
VHLLASATVT ITGVTLRGNG DVPGSGGVIL VEPGTSLILR DSVVRDGRAG RGGGIEVLGN
GVNPAGANAT IERVTFTGNR AASLGGALSV FNGGDVSLTN VTITGNSAGN SGGGISVSLD
QALINPPKSA ATLNNVTIVR NTADDDRNDI GEGGGVSVRV DAQVINQVRL RNTIISDNAD
LSPTPARVNP DCFNILESLG YNLIHRDTGC TIVGALSGNI IGVSAQPGVL LNNGGSTPTV
ALQSGSPAID AGDPAVGSSC AATDQRGVAR PIDGNGNGLA ICDMGAYEAP VPGDADLSVI
LTAQPNPVEP GGVLTYSIIV LNAGPGAAES VQVQFTPPAG ATSLQIDGIG WDCIVAGVVT
CGRGALAASG VASALTIGLR VPSPGGVSTA TATVSSAQRD PAPVNNTATL SVFRGRPYLW
LPLIKR
|
|---|
| |