| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3125 |
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| Symbol | |
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| ID | 5540621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4046548 |
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| End bp | 4049754 |
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| Gene Length | 3207 bp |
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| Protein Length | 1068 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640895244 |
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| Product | transcriptional activator domain-containing protein |
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| Protein accession | YP_001433197 |
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| Protein GI | 156743068 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGC GATTCCAGCA GAAGCTCATT GTTCCGACAT CAGCGCGACC GCTGATCGAA
CGTCCTCACG TCATCGCACA ACTTGAGCGC GCCATTCGCA GCAAGCGCGT CGTCGCGCTC
GCCGCTCCTG CCGGATGGGG TAAAACGACT GCTCTGGCAC AGTGGGTCGC GCACACCACG
ATGCCCACTG CATGGTATAC GCTCGATAGT GCCGATCGCG ATCCCCAGGT TTTTCTCGAT
TATCTGTTGC ACAGCGTTGC CGATCTGGCG CCGGGAACGG CGGACATCGC CGCGCGTCTT
GCCACCGCCA CCCCCCAGAG TCTCGCGGAG ATCTCGCAGC AGACGGCGCT GGCGCTTGCT
GATGCGCCGG ATCACTTCGC CCTGATTCTT GATGATGTGC ATGTTCTGGA GGATGACCAG
TCGCAATCCA TTCCGGGCGT CTCGCTGGTT TTTGCGCTGC TGGCATCCAT CGCCGAGTAT
GCTGCCAGGT GTCATCTGGT GCTTGCATCG CGCACCCTGC CAGCTTTGCA CGGCATGGTG
CGCATGGTTG CGCAACAGCG TGCTGCTGTG TTCGATTATA GCGTGTTGCA GTTCCAGCGT
GCCGATACGC AGCGTCTTGC GGGAATGACC GCAGGGCTGA CGCTCTCCGA TGACGCCGCG
GAGCAATTGA CCGCCGCAGT TGGCGGTTGG GTCACCGGTA TCGTGCTTTC ACTGGATCAA
CCATCTGTCA ACGGCAGCAG CGTCCCCAAA CAGCATATTG TTGACTATCG CCTGGCGGAG
ATCGCCACGC AACGCGATGC CATCATCGAA GCCAACACGA GCCAGGTGTA TGCGTATTTC
GCCGAACAGA TTCTGTCGCC ACTACCAGCC GACCTGCAAC GGTTTCTTGA GGATACCAGC
GTGCTTCAGG ACCTGTCGCC GCATCGCTGC GACCGATTGC GAAACACCAC CAACTCGGCG
GAATATCTTG ACGATATCAA ACGCCGTGGT CTGTTCGTTT CGAGTCGTGC TGGATGGGTA
TCGTACCATA GTCTGTTTCG TGAGTATCTG CGATCGCGCC TCGCGCGTGA TCCCCAACGG
TATCGTTCGC TTTTGCGGAC TGCCGGCGAC CTCTATGCTA CTGAGGACGA CATCGAACGT
GCGCTCGATT GCTATCTGGC AGCCAGCGAT TATCGACAGG CGCTCGAACT GCTGCGATCG
GCAGTGCCAC GCCTGCGTCA GCGTTCGCGT CAGACCACCC TGCTGGCGTG CTTTGAACGC
CTGCATCGCT TTCGATTGAC CGGTGATCGC CACATCCGGG ACGCTATGCC GTTCCCGGCG
GTGCAAGATC CACGACTGCC CGCAACCCCG CCAGATCTCT TGTTGGCAGA GGCGCGCGTG
TATAGCGATC TGGCACTCTG GGAACGCGCA TACCTGGCGC TCCAGCTCGC CGAAGCGTCC
GGAAATGCTC AGATCCGTGC AGAAGCGCGG ATTCTCTCGG CAGAGGTGCA GGTGCTCCAG
GGCGACTACG CTCGCGCTCA ACAAACATTG CGAACCGTCG ATGTGGAGAT TCTCGATGAT
CGCCTGCGCC TGGAATATGC CATAGCCGCC GGACGCGCGC ACATTATGGC AGGCGAGGTC
GCTGCCGCCA TTACGGCATT GGAACGCGCG CATACTCTTG CGACGACCCG CGCCGACGCC
GTGGATCATC CCGGACCTCT CGCGGATATT TACGATAATC TCGGCTGGGC ATACGCTGCT
CAGGGTGATC GTCAGTCGGC TCTCCGCCAC CTGAAGCGCG CCGACGCTTG CTGGCAGGCA
TCCGGCAATC ACGGAAGGCG CGCACTGACG CTCAACAACA TGGGAGTCAT GGCGATGGAA
GAAGGGCGGT ATGCCGAAGC GCGCGCGGCA TTCGACACCG GACTGGATAT TGCCCGACAT
ACCGGGCTGC GACGTGAAGA AAGCGTGCTG CTGTGCAGCC TGGCAGAACT CATGCTGCGT
CAGGGCGATG TTGAGCAATC GATCCATTGC GCTGCTGAGG CACACGCACT GGCCACAGCG
TTCGACATCG CCAGCAGTGC GGAAGCAGCG GCGGCGACCG CGCTCTGGTC CGCTCTCCTG
GTTGGCGATA GGGCAGCCAC ATCTGCGTGG TCCGACAGGA CAGCCGCAAT CGTAGCGCCT
TTCCAACCGG AGGTGCGCGG GCGTCTGGCA TTGGCACGGG CAATGCTGGC GATGCAACAG
AGCAACCCGG ACCCGGAACG CCTCGCCAAT TTTCTGGCAG AAGCGACGGT ATGCGAAGCC
GCCCTCAGCA ACGAAGAGCG CGCCTATGTC GCACTGTTGC GCGCCGACAT CGCATACTCC
CGCGCTGGCT GGCAATGCGC TGCTGCGGAA TGGGCGGATT TCGTGGCGCG CGCTAGCACG
CTCTCCGAAC CCTTGCTGCA TCGTTTCGCA GCGGTGCATC GCAAACTCTT TGAAATCGCA
GCACCTCACA CGCCGCTTGC CGCTCGCGCG ATTGCGGGCT TCCGTCAACC CGCGTCCATA
CGCTGGCGGA TCACCGCGCT TGGCGGATTC GAGTGCCTTG TCGATGGCAT GCCGGTCGAA
CTGTCGCAAC TGCACCGCGC CCTCCTGATC CGACTCCTCG ATGCCGGTCC TCCGGGACTG
GCAGTGGAGC GCCTCTGGGA GGCGGTGTGG GGTGATGATC ACGTTTCGAT GCCCGCGTTA
CACCAGGCGC TACGCCGGTT GCGCCTGCAA ACCGGTCTCT CCGTTTCGGC GCGCGAGGGG
GCGGTTGCTA TTCGTAGCGG ATGGGACATG ATCGAGTACG ATGTGCAAGA ACTCGAACGT
CTCCTCGAGA TGCCGACCCA TCCCAACATC ATTCAGCGCG TCATGGCGCT CTACCGTGGC
GAGTTCCTTC CGGGAGCGCC CCTCAGCGCC AGTCTGTGGG TCGAGTCGCG TCGGGCGCAT
CTCCAGCAGC GTTATCTGGA TGCTATCGAA CAATTCGCAC AATCCATCGA GCGGGACTCG
CCGCAACAGG CGATGTTCTA CTACCAGCAT GTGTTGCAGA TCGATGGATG CCGCGAGCAT
ACTGCCGCAC AACTAATGCG CCTGGCTGCG CGGTTCGGCA ACCGCACCCT GGTCACGGTC
ACCTTTGAGC ATCTCAAGGG TGCGTTGCGC GCCCTTGGCG CATCGCCAGA GCCAGCAACT
GCGGCATTGT ATCAGCAACT GACATAA
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| Protein sequence | MALRFQQKLI VPTSARPLIE RPHVIAQLER AIRSKRVVAL AAPAGWGKTT ALAQWVAHTT
MPTAWYTLDS ADRDPQVFLD YLLHSVADLA PGTADIAARL ATATPQSLAE ISQQTALALA
DAPDHFALIL DDVHVLEDDQ SQSIPGVSLV FALLASIAEY AARCHLVLAS RTLPALHGMV
RMVAQQRAAV FDYSVLQFQR ADTQRLAGMT AGLTLSDDAA EQLTAAVGGW VTGIVLSLDQ
PSVNGSSVPK QHIVDYRLAE IATQRDAIIE ANTSQVYAYF AEQILSPLPA DLQRFLEDTS
VLQDLSPHRC DRLRNTTNSA EYLDDIKRRG LFVSSRAGWV SYHSLFREYL RSRLARDPQR
YRSLLRTAGD LYATEDDIER ALDCYLAASD YRQALELLRS AVPRLRQRSR QTTLLACFER
LHRFRLTGDR HIRDAMPFPA VQDPRLPATP PDLLLAEARV YSDLALWERA YLALQLAEAS
GNAQIRAEAR ILSAEVQVLQ GDYARAQQTL RTVDVEILDD RLRLEYAIAA GRAHIMAGEV
AAAITALERA HTLATTRADA VDHPGPLADI YDNLGWAYAA QGDRQSALRH LKRADACWQA
SGNHGRRALT LNNMGVMAME EGRYAEARAA FDTGLDIARH TGLRREESVL LCSLAELMLR
QGDVEQSIHC AAEAHALATA FDIASSAEAA AATALWSALL VGDRAATSAW SDRTAAIVAP
FQPEVRGRLA LARAMLAMQQ SNPDPERLAN FLAEATVCEA ALSNEERAYV ALLRADIAYS
RAGWQCAAAE WADFVARAST LSEPLLHRFA AVHRKLFEIA APHTPLAARA IAGFRQPASI
RWRITALGGF ECLVDGMPVE LSQLHRALLI RLLDAGPPGL AVERLWEAVW GDDHVSMPAL
HQALRRLRLQ TGLSVSAREG AVAIRSGWDM IEYDVQELER LLEMPTHPNI IQRVMALYRG
EFLPGAPLSA SLWVESRRAH LQQRYLDAIE QFAQSIERDS PQQAMFYYQH VLQIDGCREH
TAAQLMRLAA RFGNRTLVTV TFEHLKGALR ALGASPEPAT AALYQQLT
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