| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3076 |
|---|
| Symbol | |
|---|
| ID | 5540572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3983275 |
|---|
| End bp | 3985125 |
|---|
| Gene Length | 1851 bp |
|---|
| Protein Length | 616 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640895195 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001433148 |
|---|
| Protein GI | 156743019 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.315862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCA CGCTGACCCC CTACAACAGC CTCCTGATAG TGCTTAGTTT CATTGCAATC
GCAATTGCCG GCTATGCGTT GAAAAAACGG GCGATGCCGG GCGCATTGCC TTTGAGTCTC
CTCGCCTGTG CCATGTTCGT TTGGTTGGTG AGTTATGCGA TGGAACTGAG CAGTCAGACG
CTCTCCGTCG CGCTCTGGTG GGTCCGGCTT GAGTTTGCCG GCATTGTAGC GGTTCCAGTA
GCGTGGCTGT GGTTCGCGGT TGAGTATACC GGTGCGTGGT CCGGGATCAA TCGTCGCCGG
GTGTGGCTGC TGGGCATTGT GCCGCTTATC ACCATGATCG TCATTCTGAC GAATGAGTAT
CACCGGCAGT TCTGGCAGTC GGTGGTTCTG ATTACGGACG GTCCTTTCAC GGTCTTCGAT
TCGAGGCATG GCTTCTGGTT TTGGGTGCAT ACGGCCTATT CGTATCTGTG TCTGCTTTGT
GGAACCGGAC TTATTGTCCG TTTCATCCGT CGGACGCCGG GTTTGTTCCG TGGTCAGATC
GGCGCCATGC TGATAGCGGT TGCTGCTCCC TGGATTGGCA ATATCATCTA TCTTGCAGGG
CTGAGTCCCT GGGGAAAACT CGATCTGACC CCATTTGCGT TAACGGTGTC GCTCATTGCT
ATTGCCTGGA GCGTGTTCAG TTTTCGTCTC CTCGAAATCC GCCCGATTGC GCGTGATATG
GTGTTGCAGA GCATGAGCGA CGGTGTGATC GCAGTCGATG AGCAGGGGCG GATCATTGAG
GTCAATCGCG CCGCACAAAC AATGATAGGA TTACCCGCAT CGCAGATCAT CGGCAAACAT
GCGCGCGAGG TGATCGTGCA GTGGCCAGAG GTTGTTGCGC GCTACCGCGA TATGGTCGAG
GTGGCGGAAG AGATCGAGGT CAAGGTCGGT GCGGAGCGTC GCTGGTTCAA TGTGCAGATT
TCGCCGATCT ATGATGCGCG GCGGGCGTAT CGTGGGCGCC TGTTCGTCTG GCGCGACGTC
ACCGGGGAGC GCTTGATCCG TGAAGAACTG CGACGCAACA ATGAGCGCCT GCTGGAGGCG
CAACAGGCAT TGACCTCAGC GCTGCGAGCG GCGGAGGAAG GCAACCGTGT CAAGAGCGTC
TTTCTGGCGC ATATGAGCCA CGAGATTCGC ACGCCGCTCA CTGCGATCAT GGGGTATTGC
CAGTTGCTGG AAGCGGGGAT CGAGCGCCAG AACCTGGCGC AAACGCGTGC TGATCTGGAG
GCGATTCGGG TGGCGTCCGG TCATCTGTTG AGCCTTGCCA ATAATGTGCT GGAGATGGCA
TGGATCGAAG CCGGTCGATC CGAGGTGCAT GATATTGCGT TTGAGGTGAT GGATGTGGTG
CTGGATGTGA TCGCCACGGT GCAGCCGTTG ATCAGACGCA ATCGGAATCA CTTGCGGGTC
GAAGGGGCGG AACATGCGGG AGTCGTCCAG GGTGACCCGG CGAAGGTGCG CCAGATTCTG
CTCAACCTGG TGAGTAACGC TGCCAAGTTC ACGACTGGCG GCGAAGTAGC GGTGCGAGTT
GCGCACATTG GCGATGCATT GCAGCCGCGC ATCCAGTTTC AGGTGTCCGA CACAGGATCG
GGGATTGCGC CAGATCGGAT TGAGCGGTTG TTTATGCCGT TTGCGATTGC GGAAGAGCAC
GTGGGACGCG ATCAACGCGG CGTTGGGCTA GGGTTGGCGA TCAGCCGGTA TTATTGCCGG
TTGATGGGCG GCGATCTCTC CATCGAGAGC GCGCTGGGGC GCGGCACGAC GGTGACGTTT
TGGATTCCCG CGCGTGTGCC GCAGGGTGCG CTGGCGCGAG TGAAGTGTTA G
|
|---|
| Protein sequence | MNVTLTPYNS LLIVLSFIAI AIAGYALKKR AMPGALPLSL LACAMFVWLV SYAMELSSQT
LSVALWWVRL EFAGIVAVPV AWLWFAVEYT GAWSGINRRR VWLLGIVPLI TMIVILTNEY
HRQFWQSVVL ITDGPFTVFD SRHGFWFWVH TAYSYLCLLC GTGLIVRFIR RTPGLFRGQI
GAMLIAVAAP WIGNIIYLAG LSPWGKLDLT PFALTVSLIA IAWSVFSFRL LEIRPIARDM
VLQSMSDGVI AVDEQGRIIE VNRAAQTMIG LPASQIIGKH AREVIVQWPE VVARYRDMVE
VAEEIEVKVG AERRWFNVQI SPIYDARRAY RGRLFVWRDV TGERLIREEL RRNNERLLEA
QQALTSALRA AEEGNRVKSV FLAHMSHEIR TPLTAIMGYC QLLEAGIERQ NLAQTRADLE
AIRVASGHLL SLANNVLEMA WIEAGRSEVH DIAFEVMDVV LDVIATVQPL IRRNRNHLRV
EGAEHAGVVQ GDPAKVRQIL LNLVSNAAKF TTGGEVAVRV AHIGDALQPR IQFQVSDTGS
GIAPDRIERL FMPFAIAEEH VGRDQRGVGL GLAISRYYCR LMGGDLSIES ALGRGTTVTF
WIPARVPQGA LARVKC
|
|---|
| |