| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3060 |
|---|
| Symbol | |
|---|
| ID | 5540556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3962876 |
|---|
| End bp | 3963781 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640895179 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433132 |
|---|
| Protein GI | 156743003 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.726847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.868824 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAC TTAATCCAAT CCTGGTGAAA GACCTGCGCA GCCGCATGCG CGGCGCGCGC
GCGTACATTC TGCTTACGAT CTATCTGCTC ATTCTGGCGG GAGTCACACT GCTGCTCTAT
GCGGCGCTCT CAGGCGAAAG CTCCAACGAT CTGAACGCCG GACGGCGAAT CGGTCAGACG
CTCTTTTTCA CCATCGCAAC CGTGGCACTG ATCGAGGTCT GCCTGATCAC GCCAGTGCTA
ACATCAGGAA GCATTGCCGG CGAAAAAGAG CGTCAGTCGT ATGACCTGCT GATCGCGTCA
TTGCTCACAC CGTGGCAGAT TGTGTGGGGC AAACTGGTGT CGGCGCTGGC GTTCGCTCTG
CTTCTGATCG TGGCGATTGT GCCGGTGATG AGCCTGGCAT TTCTGTTCGG CGGCATTGGG
CTGACGGAAG TGCTCATTGC AATCGCCGGG CTGGTTGTAA CGGCGGTCCT CTACGCAACC
ATCGGCTTGT TCTGGTCCGC CGTGCTGCAA AGCTCCCTGG GAGCGACCAG TTTCGCCATC
GGCACAGTCA TCGCCCTGCT GTTGGGCATT CCATTTCTCA TTGTGATTTT CAGCCTGATC
CTGGGATCCA GCGCGCCGTC AGATCTGCTG GACTCGGTCT GGTTCATCTA TCTCAGCCGA
TTCGTCACTG CGTCGCACCC CTTTATTGCA CTCGGCGCTA CGGCGTCGCT CCTCTCGAGC
GGAGGCGATG CTTTCTTCGA AGTCGTGCGG ACAGGCACAA CGATTGTGGT TGTGCCAAGC
CCATGGTTGC TCTATATCGC GCTTTCGCTG ATCGCTGTGA TGCTGCTGTT GACAGCAAGC
GTGCGACTCG TTCAGCCAGC GTCACCAGGC GCCGACCGGA AGAAGCGCAC CGGCAGACAG
GGATGA
|
|---|
| Protein sequence | MPELNPILVK DLRSRMRGAR AYILLTIYLL ILAGVTLLLY AALSGESSND LNAGRRIGQT
LFFTIATVAL IEVCLITPVL TSGSIAGEKE RQSYDLLIAS LLTPWQIVWG KLVSALAFAL
LLIVAIVPVM SLAFLFGGIG LTEVLIAIAG LVVTAVLYAT IGLFWSAVLQ SSLGATSFAI
GTVIALLLGI PFLIVIFSLI LGSSAPSDLL DSVWFIYLSR FVTASHPFIA LGATASLLSS
GGDAFFEVVR TGTTIVVVPS PWLLYIALSL IAVMLLLTAS VRLVQPASPG ADRKKRTGRQ
G
|
|---|
| |