| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3002 |
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| Symbol | |
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| ID | 5540498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3895388 |
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| End bp | 3899092 |
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| Gene Length | 3705 bp |
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| Protein Length | 1234 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640895124 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001433077 |
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| Protein GI | 156742948 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.131007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACCG TTGCTGCACT CAACGCGGCA AATGATGAAA CCATGTCCAG ACGTCACCTG
GTGTGCAGCC TGGTCGATAC AATGCCGTGG TCTATTGTGT TGGTCGACTC GTCTGGCATG
ATTGCCGCCA TCAGCCCATC GGCGCGTCGT CTTCTCGATG TTTCGGCAGG CTCGCCGGCT
GTCACCATTC TGCCGGCGGA CATCGATGAT CGGACGCGGG TGCGTTTTTA TCAGGCGCTC
GCGTGCGCGT CCGACCGCAT GCCCGGCGTG TCATATGTGT TTCAGCGGCT CGAACCGTCG
CCTGTCGAGA TCGAAATGTT GCCTATTGTG CTCGACCATG CGGGATGGGT GTCGGTGACG
TTGCACGAAC CCTCGCGTCA GGCAGTATTG CACGAAGCGA CAATCACCCT ACACCGGCGG
TTGCACGCCC TTTCCAGCGT AGCCTCGCTC CGCGAGGCAT GTCATCAGGT GAGTGAAGTC
CTCCTTCCTG CGGGCGTTAG CCTCGCCGTG ATTGTATGGG ATGCCAGGGA ATCGTCGTTC
TCTCCGGTGT ATACATCGCC GCCATGGGAA AGCATTGCTT GCGACAAGCG TGTGTCGGCG
CTGGCGCTCC AGCAATCCGC CCCTCTGTTT ATCAGCGTAA CCGATCAGAG CATTGACCAT
GGGATAACGC CTGCTTTAGG CGCGCGTGGG CATACGGTCG TTCTGCTGCC GGGGAACGCG
CGCCGTCATT ATGTGCTGCA TCTGTGGGGC AGCAGCGTAT CGCCGGACAC AGAGACGGCA
ATGAGCGTGA TTGCGGCACT GCTTGCCTCA CTGCTGGCGC ATGCTCTCGA ACGTGAAGAG
ACAACACGTC AGAGCCGGTT GCTCGATGCC CTGTCGGATG CTGCGCAGGC GATTATGGCG
CATGGGACGG TTGACGACGC GCTGCGCGAA ATCTGCCACC GGGTGATGAC GCTTCTCAGA
GCGGATCACG CAAGCCTCTA TCTTCCTGCC GGTGATCCTG GACTCCTTGT TTGCGCAATG
ACTGCCGGTG TCGCCGACCA TTTGCGCGGA AGGACGCTGC CGGTCATTGG CAGCCTGATC
GGGCGCACCT TCCGCGAAGG CTCACTCATG CGCTTCACCG ACATCGAATC GGAACCGGAG
ATGCACCGTC CATTCTGGGA AGCGCATCGT TTGAAGGCGG CGCTGAATCA GCCGCTCCAC
CATCACGAGC GGGTCATCGG CGTCCTCGGC GTTGGATGGT ATCAGGCGCC GGAACCGCAT
GACGATGATG CGATGATCAT CAGGCGCTTC GCCGAATTTG CGACTGCGGT TCTCCTGAAT
GCACATCTGC GCCGAACGCT CTCCTACCCC GATGACCCAC GCCTGGTGTT TGAGCATTCA
GAGGAACTGG CGTTTAGTCT GGCGCCCGAT GGAACTATTC TGCGTTGTAA CCAATCCGCT
GCCGGCCGGG TTGGCGTCAG ACCTGGCATG TCGTTCTTTG ATGTCGTTAC CCCTGCCTGT
GAGCACGAGG TGCGACAGTA TCTTCAGGAT GCGGTTACCA ATCAATACCC GCCTCCTCTG
TGGACGTTTG AGGTGGTGAG TCTTCAGGAG CAGCCGATTG TGCTCGAGAC GACGGCGCAG
GTGATCCGGC GCGACGCGTC GGTGATCGAA ATCGACCTGA TCTGTCGCGA TGTCACCGCG
CGCCGCGCCG CCGAACAGGA AATGCGGCAA CTGCACCTGG AGTTGACCAC CCTGCTGCGC
GTTAGTCAGG CGATCAATCG TGCGACCGAT CTCGATACGG TGCTGAGCGC CACTCTGGAC
ATTATCGTGC AGGCAATGGC GATCCACACT GCGGCGATTG TTCTGTACGA CACTGAGAGC
CGCCTTCAGT TAAAGCTCGT CCACGGCATC TCGCCGTCCA GAATTGCACA CTGTAATCAG
TTGCTCGCTC ACATGTTTCA GGAAGAGCAG GAGGCGCTGG CAGGGGGAGC GTCTCGCGTG
ATTGATGTCA GAACCCTACG CATGCAAATG CCTGATCTGC CGGCGCTCAA GCGGTTGCCG
GATGATGCGG CGTACCTGTC AGTCATCCCG TTGTTGATCG ATGGCGTGAT CATCGGCCTG
CTCGAATGCC TCAGCATGCA GCGTCCGTTC GAGATGCGCG ATAGAGAACT GTTGGAGGCG
ATCGCATCGC AACTGGCGCA GGCGATCCGC AATGCGCAGA CTAACCAGGA GATGCGGGAA
ACGTCGTTGA TGAATGCGCG CCTGTACCGC GAAGCGGAGG CGATGCGCGC GTATCTCGAC
GCGATTATCC AGAATGTGCC TGATGTGCTG ATCGTCTGTC GTCCGGACAT GTCGATGCAA
CCGCTGAACC AGGAGCCGTT GACCGCCCTT GGATATCAGC GTCACGAACT CGCCGGTCAG
TCGCTTTTGC GCCTTGTGCC GCCCGATAAC CGTACACATC TGACGCGCGC CTGGCTTCAG
GTGCGGCAGG GTGAATCGCA ACGTTTCGAG ATGGACCTGC TCCGCGCCGG TGAAAGCCGT
TTTACGGCGC TGGTTTCGCT CGATCTGATC CCCGATTACA ATGAGGTGCT GGTCGTTATC
AAGGATGTGA CCGAACTGCG GCGGCTGGAG GCGCAGGTGC GCCAGCACGA GAAACTGGCG
GCGCTTGGTC GATTGGTCGC CGGAGCTGCG CATGAGTTGA ACAATCCGCT AGCAGTCATT
CTGGGGCTAT CGCAACTGCA ACTTGGCGAG GATATTCCCC TTTCTGTGCG TGCCGATCTC
GAACAGATCG AACGCGCTGC ACGGCGCGCT GCCGCGATCG TCCATCAACT GCGCGCATTT
GGGCAACCAC GCGCCCTGGA ACTCGTCCCG CTCGATCTCT CGCTGGTGAT CGATGAGACC
TTGCAACGTC TGGCGTCCCG GATCGCCGCC GAGCATATTG CGGTGACGGT CGATCTGCCT
CCCGACTTAC CGCGCGTTCT TGGCGAACTG CATCAGATCG AGCAGGTAGT GTTCAATATC
GCGCTGAACG CTGTTCAGGC GCTGGCGCTT CGTCTGCCCG GCGAGCCGCG CCATCTGCGC
TTCAGCGCCA GAGAGGATTC GGATAGCGTT GTGCTGACGA TTGAAGATAC TGGACCGGGG
ATTGCGCCGG AACACCTCTC GCGTGTGTTC GAGCCGTTCT TTACCACCCG TGATGTAGGG
CAGGGCATGG GGATGGGGCT TGCTGTGGTG TATAGCATTA TGCAGCAACA TCGTGGTGAG
GTATGGGTTG AGAGCAGTCA GGGTGTGGGA ACCGTCTTCA GGGTGCGTCT GCTACGAACG
GACGAAACGC TGGAGGAGGA AAGCACGCCG TTGCTCGCGA TTCCGCGCAA TCTCTCCGTT
TTGCTGGTTG AAGATGATGA TCTGGTGCGC GCGATGGCGC AGCGGGCGTT GGAACGTCTT
GGATGCCGCG TCGATGCGGT CTCCAGAGGT GAAGAGGCGC TGGCGCGCGC GCTTGCCTGG
AATTATGCGC TCGTGATCAC CGACCTGCAA ATGCCTGGGC TGGATGGCGT CGAGTTATAT
GAGCGTCTTC GGGTGCTCAA GCCATCATTG CGCTGGCTAA TCCTGACTGG CGATACCATG
GGCGAACGCA GCAGCGCCTT TCTCCAGCGC ACCGGACTGC CTGTGCTGCA CAAGCCGTTT
ACTCACGAAC AACTGATGGA AGGGATTGCG GCAAGCCTGC AATGA
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| Protein sequence | MATVAALNAA NDETMSRRHL VCSLVDTMPW SIVLVDSSGM IAAISPSARR LLDVSAGSPA
VTILPADIDD RTRVRFYQAL ACASDRMPGV SYVFQRLEPS PVEIEMLPIV LDHAGWVSVT
LHEPSRQAVL HEATITLHRR LHALSSVASL REACHQVSEV LLPAGVSLAV IVWDARESSF
SPVYTSPPWE SIACDKRVSA LALQQSAPLF ISVTDQSIDH GITPALGARG HTVVLLPGNA
RRHYVLHLWG SSVSPDTETA MSVIAALLAS LLAHALEREE TTRQSRLLDA LSDAAQAIMA
HGTVDDALRE ICHRVMTLLR ADHASLYLPA GDPGLLVCAM TAGVADHLRG RTLPVIGSLI
GRTFREGSLM RFTDIESEPE MHRPFWEAHR LKAALNQPLH HHERVIGVLG VGWYQAPEPH
DDDAMIIRRF AEFATAVLLN AHLRRTLSYP DDPRLVFEHS EELAFSLAPD GTILRCNQSA
AGRVGVRPGM SFFDVVTPAC EHEVRQYLQD AVTNQYPPPL WTFEVVSLQE QPIVLETTAQ
VIRRDASVIE IDLICRDVTA RRAAEQEMRQ LHLELTTLLR VSQAINRATD LDTVLSATLD
IIVQAMAIHT AAIVLYDTES RLQLKLVHGI SPSRIAHCNQ LLAHMFQEEQ EALAGGASRV
IDVRTLRMQM PDLPALKRLP DDAAYLSVIP LLIDGVIIGL LECLSMQRPF EMRDRELLEA
IASQLAQAIR NAQTNQEMRE TSLMNARLYR EAEAMRAYLD AIIQNVPDVL IVCRPDMSMQ
PLNQEPLTAL GYQRHELAGQ SLLRLVPPDN RTHLTRAWLQ VRQGESQRFE MDLLRAGESR
FTALVSLDLI PDYNEVLVVI KDVTELRRLE AQVRQHEKLA ALGRLVAGAA HELNNPLAVI
LGLSQLQLGE DIPLSVRADL EQIERAARRA AAIVHQLRAF GQPRALELVP LDLSLVIDET
LQRLASRIAA EHIAVTVDLP PDLPRVLGEL HQIEQVVFNI ALNAVQALAL RLPGEPRHLR
FSAREDSDSV VLTIEDTGPG IAPEHLSRVF EPFFTTRDVG QGMGMGLAVV YSIMQQHRGE
VWVESSQGVG TVFRVRLLRT DETLEEESTP LLAIPRNLSV LLVEDDDLVR AMAQRALERL
GCRVDAVSRG EEALARALAW NYALVITDLQ MPGLDGVELY ERLRVLKPSL RWLILTGDTM
GERSSAFLQR TGLPVLHKPF THEQLMEGIA ASLQ
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