Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3002 |
Symbol | |
ID | 5540498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3895388 |
End bp | 3899092 |
Gene Length | 3705 bp |
Protein Length | 1234 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895124 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001433077 |
Protein GI | 156742948 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.131007 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAACCG TTGCTGCACT CAACGCGGCA AATGATGAAA CCATGTCCAG ACGTCACCTG GTGTGCAGCC TGGTCGATAC AATGCCGTGG TCTATTGTGT TGGTCGACTC GTCTGGCATG ATTGCCGCCA TCAGCCCATC GGCGCGTCGT CTTCTCGATG TTTCGGCAGG CTCGCCGGCT GTCACCATTC TGCCGGCGGA CATCGATGAT CGGACGCGGG TGCGTTTTTA TCAGGCGCTC GCGTGCGCGT CCGACCGCAT GCCCGGCGTG TCATATGTGT TTCAGCGGCT CGAACCGTCG CCTGTCGAGA TCGAAATGTT GCCTATTGTG CTCGACCATG CGGGATGGGT GTCGGTGACG TTGCACGAAC CCTCGCGTCA GGCAGTATTG CACGAAGCGA CAATCACCCT ACACCGGCGG TTGCACGCCC TTTCCAGCGT AGCCTCGCTC CGCGAGGCAT GTCATCAGGT GAGTGAAGTC CTCCTTCCTG CGGGCGTTAG CCTCGCCGTG ATTGTATGGG ATGCCAGGGA ATCGTCGTTC TCTCCGGTGT ATACATCGCC GCCATGGGAA AGCATTGCTT GCGACAAGCG TGTGTCGGCG CTGGCGCTCC AGCAATCCGC CCCTCTGTTT ATCAGCGTAA CCGATCAGAG CATTGACCAT GGGATAACGC CTGCTTTAGG CGCGCGTGGG CATACGGTCG TTCTGCTGCC GGGGAACGCG CGCCGTCATT ATGTGCTGCA TCTGTGGGGC AGCAGCGTAT CGCCGGACAC AGAGACGGCA ATGAGCGTGA TTGCGGCACT GCTTGCCTCA CTGCTGGCGC ATGCTCTCGA ACGTGAAGAG ACAACACGTC AGAGCCGGTT GCTCGATGCC CTGTCGGATG CTGCGCAGGC GATTATGGCG CATGGGACGG TTGACGACGC GCTGCGCGAA ATCTGCCACC GGGTGATGAC GCTTCTCAGA GCGGATCACG CAAGCCTCTA TCTTCCTGCC GGTGATCCTG GACTCCTTGT TTGCGCAATG ACTGCCGGTG TCGCCGACCA TTTGCGCGGA AGGACGCTGC CGGTCATTGG CAGCCTGATC GGGCGCACCT TCCGCGAAGG CTCACTCATG CGCTTCACCG ACATCGAATC GGAACCGGAG ATGCACCGTC CATTCTGGGA AGCGCATCGT TTGAAGGCGG CGCTGAATCA GCCGCTCCAC CATCACGAGC GGGTCATCGG CGTCCTCGGC GTTGGATGGT ATCAGGCGCC GGAACCGCAT GACGATGATG CGATGATCAT CAGGCGCTTC GCCGAATTTG CGACTGCGGT TCTCCTGAAT GCACATCTGC GCCGAACGCT CTCCTACCCC GATGACCCAC GCCTGGTGTT TGAGCATTCA GAGGAACTGG CGTTTAGTCT GGCGCCCGAT GGAACTATTC TGCGTTGTAA CCAATCCGCT GCCGGCCGGG TTGGCGTCAG ACCTGGCATG TCGTTCTTTG ATGTCGTTAC CCCTGCCTGT GAGCACGAGG TGCGACAGTA TCTTCAGGAT GCGGTTACCA ATCAATACCC GCCTCCTCTG TGGACGTTTG AGGTGGTGAG TCTTCAGGAG CAGCCGATTG TGCTCGAGAC GACGGCGCAG GTGATCCGGC GCGACGCGTC GGTGATCGAA ATCGACCTGA TCTGTCGCGA TGTCACCGCG CGCCGCGCCG CCGAACAGGA AATGCGGCAA CTGCACCTGG AGTTGACCAC CCTGCTGCGC GTTAGTCAGG CGATCAATCG TGCGACCGAT CTCGATACGG TGCTGAGCGC CACTCTGGAC ATTATCGTGC AGGCAATGGC GATCCACACT GCGGCGATTG TTCTGTACGA CACTGAGAGC CGCCTTCAGT TAAAGCTCGT CCACGGCATC TCGCCGTCCA GAATTGCACA CTGTAATCAG TTGCTCGCTC ACATGTTTCA GGAAGAGCAG GAGGCGCTGG CAGGGGGAGC GTCTCGCGTG ATTGATGTCA GAACCCTACG CATGCAAATG CCTGATCTGC CGGCGCTCAA GCGGTTGCCG GATGATGCGG CGTACCTGTC AGTCATCCCG TTGTTGATCG ATGGCGTGAT CATCGGCCTG CTCGAATGCC TCAGCATGCA GCGTCCGTTC GAGATGCGCG ATAGAGAACT GTTGGAGGCG ATCGCATCGC AACTGGCGCA GGCGATCCGC AATGCGCAGA CTAACCAGGA GATGCGGGAA ACGTCGTTGA TGAATGCGCG CCTGTACCGC GAAGCGGAGG CGATGCGCGC GTATCTCGAC GCGATTATCC AGAATGTGCC TGATGTGCTG ATCGTCTGTC GTCCGGACAT GTCGATGCAA CCGCTGAACC AGGAGCCGTT GACCGCCCTT GGATATCAGC GTCACGAACT CGCCGGTCAG TCGCTTTTGC GCCTTGTGCC GCCCGATAAC CGTACACATC TGACGCGCGC CTGGCTTCAG GTGCGGCAGG GTGAATCGCA ACGTTTCGAG ATGGACCTGC TCCGCGCCGG TGAAAGCCGT TTTACGGCGC TGGTTTCGCT CGATCTGATC CCCGATTACA ATGAGGTGCT GGTCGTTATC AAGGATGTGA CCGAACTGCG GCGGCTGGAG GCGCAGGTGC GCCAGCACGA GAAACTGGCG GCGCTTGGTC GATTGGTCGC CGGAGCTGCG CATGAGTTGA ACAATCCGCT AGCAGTCATT CTGGGGCTAT CGCAACTGCA ACTTGGCGAG GATATTCCCC TTTCTGTGCG TGCCGATCTC GAACAGATCG AACGCGCTGC ACGGCGCGCT GCCGCGATCG TCCATCAACT GCGCGCATTT GGGCAACCAC GCGCCCTGGA ACTCGTCCCG CTCGATCTCT CGCTGGTGAT CGATGAGACC TTGCAACGTC TGGCGTCCCG GATCGCCGCC GAGCATATTG CGGTGACGGT CGATCTGCCT CCCGACTTAC CGCGCGTTCT TGGCGAACTG CATCAGATCG AGCAGGTAGT GTTCAATATC GCGCTGAACG CTGTTCAGGC GCTGGCGCTT CGTCTGCCCG GCGAGCCGCG CCATCTGCGC TTCAGCGCCA GAGAGGATTC GGATAGCGTT GTGCTGACGA TTGAAGATAC TGGACCGGGG ATTGCGCCGG AACACCTCTC GCGTGTGTTC GAGCCGTTCT TTACCACCCG TGATGTAGGG CAGGGCATGG GGATGGGGCT TGCTGTGGTG TATAGCATTA TGCAGCAACA TCGTGGTGAG GTATGGGTTG AGAGCAGTCA GGGTGTGGGA ACCGTCTTCA GGGTGCGTCT GCTACGAACG GACGAAACGC TGGAGGAGGA AAGCACGCCG TTGCTCGCGA TTCCGCGCAA TCTCTCCGTT TTGCTGGTTG AAGATGATGA TCTGGTGCGC GCGATGGCGC AGCGGGCGTT GGAACGTCTT GGATGCCGCG TCGATGCGGT CTCCAGAGGT GAAGAGGCGC TGGCGCGCGC GCTTGCCTGG AATTATGCGC TCGTGATCAC CGACCTGCAA ATGCCTGGGC TGGATGGCGT CGAGTTATAT GAGCGTCTTC GGGTGCTCAA GCCATCATTG CGCTGGCTAA TCCTGACTGG CGATACCATG GGCGAACGCA GCAGCGCCTT TCTCCAGCGC ACCGGACTGC CTGTGCTGCA CAAGCCGTTT ACTCACGAAC AACTGATGGA AGGGATTGCG GCAAGCCTGC AATGA
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Protein sequence | MATVAALNAA NDETMSRRHL VCSLVDTMPW SIVLVDSSGM IAAISPSARR LLDVSAGSPA VTILPADIDD RTRVRFYQAL ACASDRMPGV SYVFQRLEPS PVEIEMLPIV LDHAGWVSVT LHEPSRQAVL HEATITLHRR LHALSSVASL REACHQVSEV LLPAGVSLAV IVWDARESSF SPVYTSPPWE SIACDKRVSA LALQQSAPLF ISVTDQSIDH GITPALGARG HTVVLLPGNA RRHYVLHLWG SSVSPDTETA MSVIAALLAS LLAHALEREE TTRQSRLLDA LSDAAQAIMA HGTVDDALRE ICHRVMTLLR ADHASLYLPA GDPGLLVCAM TAGVADHLRG RTLPVIGSLI GRTFREGSLM RFTDIESEPE MHRPFWEAHR LKAALNQPLH HHERVIGVLG VGWYQAPEPH DDDAMIIRRF AEFATAVLLN AHLRRTLSYP DDPRLVFEHS EELAFSLAPD GTILRCNQSA AGRVGVRPGM SFFDVVTPAC EHEVRQYLQD AVTNQYPPPL WTFEVVSLQE QPIVLETTAQ VIRRDASVIE IDLICRDVTA RRAAEQEMRQ LHLELTTLLR VSQAINRATD LDTVLSATLD IIVQAMAIHT AAIVLYDTES RLQLKLVHGI SPSRIAHCNQ LLAHMFQEEQ EALAGGASRV IDVRTLRMQM PDLPALKRLP DDAAYLSVIP LLIDGVIIGL LECLSMQRPF EMRDRELLEA IASQLAQAIR NAQTNQEMRE TSLMNARLYR EAEAMRAYLD AIIQNVPDVL IVCRPDMSMQ PLNQEPLTAL GYQRHELAGQ SLLRLVPPDN RTHLTRAWLQ VRQGESQRFE MDLLRAGESR FTALVSLDLI PDYNEVLVVI KDVTELRRLE AQVRQHEKLA ALGRLVAGAA HELNNPLAVI LGLSQLQLGE DIPLSVRADL EQIERAARRA AAIVHQLRAF GQPRALELVP LDLSLVIDET LQRLASRIAA EHIAVTVDLP PDLPRVLGEL HQIEQVVFNI ALNAVQALAL RLPGEPRHLR FSAREDSDSV VLTIEDTGPG IAPEHLSRVF EPFFTTRDVG QGMGMGLAVV YSIMQQHRGE VWVESSQGVG TVFRVRLLRT DETLEEESTP LLAIPRNLSV LLVEDDDLVR AMAQRALERL GCRVDAVSRG EEALARALAW NYALVITDLQ MPGLDGVELY ERLRVLKPSL RWLILTGDTM GERSSAFLQR TGLPVLHKPF THEQLMEGIA ASLQ
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