| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3001 |
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| Symbol | |
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| ID | 5540497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3894042 |
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| End bp | 3895193 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895123 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_001433076 |
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| Protein GI | 156742947 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.19098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCCCTG TCGTTCAAAT CGTTCATCGT CCCGGCATCC TCGATTTGGG GTGGGGGCAT
CCCGATCCTG CCGTGTTACC GGTCGCATCC ATACAACGTG CCGCAACAAC CGTGCTCGCG
CGCTACGGCG CCGATGCCCT GGCGTATGGC GCCGAGCGCG GACCAGGACC GCTGATCGCG
TGGATCTGCT CTCGTCTGAA GCGCACCGAT GCGCGCGCGC CTGATCCGGT TGAGGTGGTG
ATCACCGCTG GCGCCTCGCA GACGCTCGAT CTCCTCTGCA CACTCTGCAC GCATCCCGGC
GATGTCGTGC TGGTCGAGTC GCCGACGTAT CATCTGGCGG TGCGTATCCT GCGCGATCAT
CCGCTGAATC TGGTCGCCGT CCCTTCCGAT GCCGACGGCA TTGATGTTGA TGCGCTGAAA
AGTCTTCTGG AGCGGATGGC GCGGCGCGGC AGAACGGCGC GTCTGCTCTA CTTCGTTCCC
ACGCACCACA ACCCGACCGG CGTATGCATG AGCCTTGAAC GTCGCAGAGC GCTGGCGGCA
GTCGCCGCAG CGTATGGGGT GCTCCTGGTG GAAGACGACG TGTACCGTGA ACTGAGTTAC
GATGCTCCTG CGCCGCCGTC AGTGTGGAGT CTGGCGCCTC CGGGCATCGT GGCGCGCATC
GGCTCCTTCT CAAAATCGCT GGCGCCAGGG TTGCGCCTGG GCTATCTGAC TGCTGATGCG
TCATTGACCC GGCGATTGAT CGGCAGCGGA TTGCTCGACA GCGGCGGTGG TCTCAACCCT
TTTGTGGCGC TGACGGTTGC CGAAGTCTGC ACATCGGGCG ATTTCGATGC AACAATTGCG
CGCCTTTGCG CCACTTACCG TGAGCGACGT GATGCGCTGG CAGGTGGTCT GCGTGATTAC
CTGCCGCCGG GATGCCATTG TACCGTGCCC GGCGGCGGTT TCTTTCAATG GGTGGCATTG
CCGGAAGGGA TCGATGCCGG GGAATTGTTG CCGTTCGCCG AATCCATGGG GGTCTCATAC
CTGCCCGGAT CACGGTTTTA TCTCGACGCG CCACGACGTA ACACGCTCCG GTTGGCATTC
AGCCTGTACC AACCGCCTCA ACTCATCGAA GCGGCGCGGC GTCTGGGAGA AGCCATTGCG
ACCGTCGTCT GA
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| Protein sequence | MLPVVQIVHR PGILDLGWGH PDPAVLPVAS IQRAATTVLA RYGADALAYG AERGPGPLIA
WICSRLKRTD ARAPDPVEVV ITAGASQTLD LLCTLCTHPG DVVLVESPTY HLAVRILRDH
PLNLVAVPSD ADGIDVDALK SLLERMARRG RTARLLYFVP THHNPTGVCM SLERRRALAA
VAAAYGVLLV EDDVYRELSY DAPAPPSVWS LAPPGIVARI GSFSKSLAPG LRLGYLTADA
SLTRRLIGSG LLDSGGGLNP FVALTVAEVC TSGDFDATIA RLCATYRERR DALAGGLRDY
LPPGCHCTVP GGGFFQWVAL PEGIDAGELL PFAESMGVSY LPGSRFYLDA PRRNTLRLAF
SLYQPPQLIE AARRLGEAIA TVV
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