| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2929 |
|---|
| Symbol | |
|---|
| ID | 5540419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3793352 |
|---|
| End bp | 3797041 |
|---|
| Gene Length | 3690 bp |
|---|
| Protein Length | 1229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895050 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001433009 |
|---|
| Protein GI | 156742880 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.663255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.36299 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG TGCGACGACT GGAAGGAAAA GTGGCGCTGA TCACGGGCGG CGCTGGCAAC
ATTGGCGAGG TCATCACCCG CCGATTTCTG GCGGAAGGCG CGACGGTCGT TATTACGGGG
CGCAATGCGG AAAAACTTGC GGTGTATCGC CGCCGCCTGA TCGATGAAGA GCGCGTTGCT
CCCGAGCGCG TCGTTGCGCT GCGTATGGAC GGCAGCGATA TTGCTCAGGT GCGCGCAGGA
GTTGCGCAGA TCGTCCACGG CGGCACAGAC GTTCCCATAC CGCTGCATCG TATCGATATC
CTGGTCAACA ACGCCGGCAG CGCCGGACCC CGCCGTCGCC TGGTTGATAT TCCGCTCGAA
CCCTCGGAAG TGCAACCGCC AGACAGCGAA ACGCTGGCGC AGGCGGTCGG GAATCTGGTT
GGAATTACGT GGAATCTGAC ACGCGCAGCG GCGCCGCATA TGCCGTCTGG CAGCAGCGTG
ATCAATATTT CGACGATCTT TTCTCGCACC GATTACTACG GGCGTATTGC GTATGTTGCG
CCTAAGGCGG CGCTCAATGC GCTGAGCGAC GGGTTGGCGC GCGAATTGGG TGTGCGCGGC
ATTCGCGTCA ATACCATCTA CCCCGGGCCG ATCGAGAGCG AACGCATTTA TACGATGTTT
CAGGCGATGG ACGCGCTCAA AGGTCAACCC GAGGGCGACA CTGCCAGTGG CTTTCTGAGG
ATGATGCGCT TGAGCCGCAT CGATCAGAAT GGCGAAGTGG TCAAACGCTT CCCTTCTCCT
GTTGATGTCG CCAATACGGC GGTGTTCCTC GCCAGCGATG AGTCGGCAGC GTTCACCGGG
CACGCCTTCG AGGTGACACA CGGCATGGAG GTGCCAACCG AGAGTCGCAC AACGTTTGTG
TCGCGCCCCG GGCTGCGCAG CGTCGATGCC ACCGGCAAGG TTATTCTGAT CTGCGCTGGC
GATCAGGTTG ATGATGCGGT TGCGCTGGCC GACACGTTGC GCTCCTGCCG CGCGACGGTC
GTGATCGGGT TCCGTGATCC GCGCGCGCTA GAAAAGGCGT CAGTGCTCCT GCGCGAACCA
CGCCACGCGC TTGCTGCCGA TATGTATGGC CGCCCGACGA TGACGGCGGA AGCGCGCCTG
GTGCGCCTCG ATCCCCTCGA CCCGCGCGCT GCGGCACAGA CGCTCGAGCA GATTCATGCC
GAACTCGGCG CCATTCACCA CGCTGTCGTT CTGCCTGGGC AGAGTCGCCA TGCGCCTTCC
GCAAGCCTGA TCGAAGTGGA CGATCAGGTC GTCGAGCGCT TCCTGCACCA GGAATTAGTA
GGCACGATTG CGCTGGCGCG CGAACTGGCG CGCTTCTGGG AGGAATATCC TTCCGGCTCA
TCAATGCATC GCGTGCTGTT TGTGAGCAAT CCCGACGATC AGCAGGGTAA TCAGTATAGT
CACATCCTGC GCGCTGCGGT CGAGCAATTG GTGCGCGTCT GGCGCCATGA GAGCGAGTAC
GACTCGGTCA ATCCAGCGCA TCAGCAGGAA GGTCAGTCGA GCGCCGCTGT GTGGGCGAAC
CAATTGATCC GCTATGTGAA CAATGAGATG GCCAACCTCG ATTTTACCTG CGCATGGGTG
GCAAAATTGT TGGGGAGCGA CCGGCGCATT GCTGAAATCA ATCTCTATCT CCCCGAAGAA
ATCGTGGGCA CGATTGGCGT GCATAATCCG GGGTTCGGTT GGGCGGAAAG TCTGTTTGGT
CTCCATATGG GGAAGGTGGC GTTGATCACC GGCGGCAGCG CGGGCATCGG CGGTCAGATC
GGGCGTTTGC TGGCGCTCTC CGGCGCGCAC GTGATGCTGG CGGCGCGTAA CGCCGATCAG
TTGGAGCAGA TGCGCGCGTC GATCGTGCGT GAGGTGCGCG ATGCCAGTTA TCCTGATGCC
GAGTCGCGCG TGGCGATCTT CCCCGGCAGC GATGTCTCCG ACATCGACGG GCTTGAACGC
CTGGTCAACC ATACGGTGCG CGTGTTTGGC AAGGTGGATT ACCTGATCAA CAATGCGGGC
ATCGCCGGCG CCGAAGAGAT GGTGATCGAT ATGCCGGTGG ACGCCTGGCG CCATACACTG
CGCGCCAATC TGATCAGCAA TTATGCGCTG CTGCGCCGCC TCGCGCCGCA AATGAAGGCG
GCGGGCGGGG CGTATGTGCT GAATGTGTCG TCCTACTTCG GCGGCGAAAA GTATGTGGCG
ATCCCATACC CGAACCGCTC CGATTATGCG GTCAGTAAGG CGGGTCAGCG CGCCATGGTC
GAAAGTCTGG CGCGCTTCCT TGGTCCTGAG ATTCAGATCA ACGCAATCGC GCCCGGTCCG
GTGGAAGGTG AACGGCTGAA AGGCGCCGGG AGTCGTCCTG GTCTGTTCAT GCGCCGTGCG
CGGTTGATTC TGGAAAACAA ACGCCTCAAT GAGGTCTTCG CTGCGCTGCT GGCAGCGCGC
CACGAGGGCG CGACCATCGC CGATCTGTTG CCCGATCTGT TCGCCAATGA CATTCAGTCC
ATCGCCAATA GCGCTGCGAT GCCGGCGCCG CTGCGCCGCC TGGCGACGAT GCTGCGCGAG
ACGAGCGATG CTGGCGGGAG CGCGCAGTCG TACCTGATGA ATGCGACAAT TGCGCGCAAA
TTGCTCAATC GGCTGGAGAA TGGCGGGTAC ATTACGCTCC ACGACCGACG CGCGCTGACC
GTTGAACCGC CGGAGCCGTT CTTTACCGAA GCGCAGATCG AGCGCGAAGC GATCAAGGTG
CGTGATGGCA TTCTGGGAAT GCTCCACCTG CAACGAATGC CGACCGAGTT CGATGTGGCG
CTGGCGACGG TCTTCTATCT GGCGGACCGG AATGTGACGG GCGAGACGTT CCATCCGTCG
GGCGGGCTGC GCTTTGAGCG CACGGTCACC GAAGGCGAAC TGTTTGGCAA GCCGGGACAG
CAGCGCCTGG AACGACTGAA AGGCAGCGTC GTCTATCTGA TCGGTGAGCA CCTGCGCCAA
CATCTGGTGC TGCTGGCGCG CACCTTCCTC GATGAGATTC ATGTCGCGCG CGTCGTTCTG
CTGACAGAAA CCACGCAGGC GGCAACCGAC CTGGCAGCCG AACTGTCCGA TTATGAAGCC
GCCGGACGAT TCGTTGTCAT CCCGACGTGT GGCGACATTG AAGGCGGTAT TGATCGAGCG
ATGGCAGAAT ACGGCCGCCC CGGTCCGGTT ATCTCGACGC CGTTCCGCCC GCTGCCGGAT
CGCGCCCTGA GCGCCCGAAA CGGTGATTGG AGCAGTGTGT TGACCACCGC CGAATTCGAG
GAATTGGTCG AACAGCAGAT CACCCATCAC TTCCGCGTTG CGCGCAAGGC GGGGCTGATC
GAGGGCGCGA ACGTCACCCT GGTGACGCCG CCGACCTCGG CGCGCTCGAC GTCCGAAGAG
TTCGCGCTGG CAAACTTCGT CAAGACGACG CTCCACGCAC TCACGGCGAC CGCTGGCGCC
GAAAGTGAAC GCACGGTGCC GCATGTGCCG GTCAATCAGG TGGACCTGAC GCGGCGCGCC
CGCAGCGAGG AGCCTCGCAC GCCATCCGAA GAGGAAGAGG AATTGCAGCG TTTTGTGAAT
GCCGTGCTGC TGACCAGTGC GCCGCTGCCA ACGCCGCTCG AAAGCCGCTA TCGGGCGCGC
ATCTATCGTG GAAATGCGAT TACCGTGTAA
|
|---|
| Protein sequence | MSTVRRLEGK VALITGGAGN IGEVITRRFL AEGATVVITG RNAEKLAVYR RRLIDEERVA
PERVVALRMD GSDIAQVRAG VAQIVHGGTD VPIPLHRIDI LVNNAGSAGP RRRLVDIPLE
PSEVQPPDSE TLAQAVGNLV GITWNLTRAA APHMPSGSSV INISTIFSRT DYYGRIAYVA
PKAALNALSD GLARELGVRG IRVNTIYPGP IESERIYTMF QAMDALKGQP EGDTASGFLR
MMRLSRIDQN GEVVKRFPSP VDVANTAVFL ASDESAAFTG HAFEVTHGME VPTESRTTFV
SRPGLRSVDA TGKVILICAG DQVDDAVALA DTLRSCRATV VIGFRDPRAL EKASVLLREP
RHALAADMYG RPTMTAEARL VRLDPLDPRA AAQTLEQIHA ELGAIHHAVV LPGQSRHAPS
ASLIEVDDQV VERFLHQELV GTIALARELA RFWEEYPSGS SMHRVLFVSN PDDQQGNQYS
HILRAAVEQL VRVWRHESEY DSVNPAHQQE GQSSAAVWAN QLIRYVNNEM ANLDFTCAWV
AKLLGSDRRI AEINLYLPEE IVGTIGVHNP GFGWAESLFG LHMGKVALIT GGSAGIGGQI
GRLLALSGAH VMLAARNADQ LEQMRASIVR EVRDASYPDA ESRVAIFPGS DVSDIDGLER
LVNHTVRVFG KVDYLINNAG IAGAEEMVID MPVDAWRHTL RANLISNYAL LRRLAPQMKA
AGGAYVLNVS SYFGGEKYVA IPYPNRSDYA VSKAGQRAMV ESLARFLGPE IQINAIAPGP
VEGERLKGAG SRPGLFMRRA RLILENKRLN EVFAALLAAR HEGATIADLL PDLFANDIQS
IANSAAMPAP LRRLATMLRE TSDAGGSAQS YLMNATIARK LLNRLENGGY ITLHDRRALT
VEPPEPFFTE AQIEREAIKV RDGILGMLHL QRMPTEFDVA LATVFYLADR NVTGETFHPS
GGLRFERTVT EGELFGKPGQ QRLERLKGSV VYLIGEHLRQ HLVLLARTFL DEIHVARVVL
LTETTQAATD LAAELSDYEA AGRFVVIPTC GDIEGGIDRA MAEYGRPGPV ISTPFRPLPD
RALSARNGDW SSVLTTAEFE ELVEQQITHH FRVARKAGLI EGANVTLVTP PTSARSTSEE
FALANFVKTT LHALTATAGA ESERTVPHVP VNQVDLTRRA RSEEPRTPSE EEEELQRFVN
AVLLTSAPLP TPLESRYRAR IYRGNAITV
|
|---|
| |