Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2841 |
Symbol | |
ID | 5540330 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3683137 |
End bp | 3685416 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640894970 |
Product | polymorphic outer membrane protein |
Protein accession | YP_001432930 |
Protein GI | 156742801 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACCATT CCAGAGCATT CTCCCTTGCG ACGATCTTTT TCGTGATCAC GCTCGCCGCA GGCTGGCTGC TCTCCGCACC CTCTAGTCGC GCGGCGACAT TCACGATCCC ATGCGGCGAT GTGACGGCGC TTATCACCGC TATCACCACT GCCAATAGCA ATAATCAGCC TGACACGATC GCACTCGCTG CCGGCTGCAC CTATTCACTG ACGACGGTTG ACAATACCGT CGGTGGATCG GCAAATGGAT TGCCGGCGAT CATCATCGAT AGCGGCAACC CGACGAACAG CCTGACGATC AACGGCAACG GCGCAACGAT TGAGCGCGCG GCGGGAAGTC CGTCGTTTCG CTTGCTGTAT CTCACCAACG TTGCTGTGAC GATCAACGAC CTGACCTTCC GCAACGGATT TGCCGAGGAT GACGAAGGTG GCGCAATGCG GGCGCGCAGC CCCGATCTAA CGCTCAATCG CGTCACCTTC GAGGGCAACC GCGCGACGTA TGACGGCGGC GCGCTTGTTG CGCGCGACTC TAACCTGACG CTCAATCGCG TCACCTTTGA GAGCAATCGC GCAGGGTCCG ATGGCGGCGC GTTGTACACG GTTAGCGTGA TGGCGAACCT ATCAGACAGC ATCTTTCGCA ACAATCAGTC GGACGCGAAC GGCGGCGCTA TCGCTTTTCG CGTCGACGGA CCCGGACAGG CGACGATCAA AGGTTCGACC TTCAGCAACA ATCAGGCAGC CAGCGACGGC GGCGCCATTG CTGCGTTCCA CGAGATAACC GTTCAAAACA GCACATTCAG CAACAATCAG GCAGACGGCG ACGGCGGCGC GGTATTGTCG AACGAAAGCG CCGTTGTTGC TTACACTACG ATCACCGGCA CGCAAACCGG CGGCGACGGG GCACTGAACG GCAGCATCAC CCTGCGCAGC GCCCTGGTCG CCGGCAATAC CGACACATCT ACATCACCGG GCAACTACCC CGACATTGCC GGTTCTATCG CCAGTGACGG CTACAACCTG ATCGGAAATG TCGGCGATTA TGATTTCTCC GCGAACACCA CCGGCGATCA GTATGGCGAT CCCAATGGAA CGACCATACC AAACAGCGGC GCGGTCGAGT CGCCGACGCC AATTGACCCG TTGCTCGCGC CGCTCGCCAA CAATGGCGGT CCCACACCGA CGCATGCGCT GCTGGCAGGT TCACCCGCAC TCAACCGCAT TCTGGGAGGG ACCAATGACT GCGGCGTCGC CATCGCCATC GATCAGCGCG GCATTTCCCG ACCGCAGGAC GGCGCCTGCG ACGTTGGCGC ATTCGAGGCG ATACCTGCGC CCGAAATCGT GGTGTACAAC GGTCCTGACA CGAGCAGCCC GGAACTGACG AACAACCAGA CCACGGCTGT GGACTTCGGC GCCACGACAG TCGGCGCGCC CATCAGTCGC GTGTTCGCCA TCCGCAATAC GGGAACCGCG CCGCTGACGC TTGGCGCGCT GAGCCTCCCA TCCGGCTTTG CAGTCGTCGG GGCGTTCCCC ACCGGACCGG TCGCTCCCGG CGCAACGGTC ACATTTACGG TGCAACTGAC GGCGGTTGCC GCCGGGGTGT TCAGCGGCAC GCTCTCCTTC GTCAACGGCG ACGCCGATGA GAACCCGTTT CAGTTCCCGA TCCGCGGCGT TGTGACGGCT GCGACGCCAA CGCTTCAGCA GACATACCTG CCGCTCATTG TGCAACCAGG GCAACCCGAC CTGATCATCG CCGGCATCGA GATCATTCCC AACCAGACGA GTTTTACAGC CGGTCAACCG GTGGAGATTC GGGTGACGGT GAAGAATGTC GGCACTGCGC CGGCAGGATC ATTCTGGGTC GATCTCTACC TCAACCCGGA CCGCCCGCCG CAGATCAACG ACCTCTGGCA CGACCGTTGC GCGCTACGCC CATGTTTCGG CGTCGCCTGG GGTGTGACAC AAATCCTGCA ACCGGGAGAG CAGATCACGC TCAGCACCGG CGGCGGGTAT GATCCGCTCC GCTCCTACTG GCTGGGGTGG CTGGCAAACG GCACAACGAC GATCTACGCC CTGGCGGATA GCTGGAACAC GAGCGGCGCG AGCGGCGCCG TGCGCGAGTC GGACGAAACG AACAACCGTG GCGTGCGCGA CGGTCTGACT GTTAGTGGCG CAAACCCGCC AGCCCCGCCG TGGAAGCCGT CCGTGCTGAC AGGCGCAGCG CAGGAGTCGC TTCTGCCCGA ACGACCGGCG TATGATGGGA CGTTCCGCGC TGAACGTTGA
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Protein sequence | MHHSRAFSLA TIFFVITLAA GWLLSAPSSR AATFTIPCGD VTALITAITT ANSNNQPDTI ALAAGCTYSL TTVDNTVGGS ANGLPAIIID SGNPTNSLTI NGNGATIERA AGSPSFRLLY LTNVAVTIND LTFRNGFAED DEGGAMRARS PDLTLNRVTF EGNRATYDGG ALVARDSNLT LNRVTFESNR AGSDGGALYT VSVMANLSDS IFRNNQSDAN GGAIAFRVDG PGQATIKGST FSNNQAASDG GAIAAFHEIT VQNSTFSNNQ ADGDGGAVLS NESAVVAYTT ITGTQTGGDG ALNGSITLRS ALVAGNTDTS TSPGNYPDIA GSIASDGYNL IGNVGDYDFS ANTTGDQYGD PNGTTIPNSG AVESPTPIDP LLAPLANNGG PTPTHALLAG SPALNRILGG TNDCGVAIAI DQRGISRPQD GACDVGAFEA IPAPEIVVYN GPDTSSPELT NNQTTAVDFG ATTVGAPISR VFAIRNTGTA PLTLGALSLP SGFAVVGAFP TGPVAPGATV TFTVQLTAVA AGVFSGTLSF VNGDADENPF QFPIRGVVTA ATPTLQQTYL PLIVQPGQPD LIIAGIEIIP NQTSFTAGQP VEIRVTVKNV GTAPAGSFWV DLYLNPDRPP QINDLWHDRC ALRPCFGVAW GVTQILQPGE QITLSTGGGY DPLRSYWLGW LANGTTTIYA LADSWNTSGA SGAVRESDET NNRGVRDGLT VSGANPPAPP WKPSVLTGAA QESLLPERPA YDGTFRAER
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