| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2454 |
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| Symbol | |
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| ID | 5539935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 3152757 |
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| End bp | 3154805 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894584 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001432552 |
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| Protein GI | 156742423 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.39331 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAA ACGCCAGGCG ATCAATCAGT CGCCGCAATT TTCTGCGCCT GTCGGCTGTC
CTCGGCGCAA GCGCCGGCCT TGCCGCCTGC GGCGGCGCTC CGACCGCTCC CGCTCCCACT
GCCGCTCCAT CCGCTCCAAC TGCGCCACCG GCGCCAACGG TCGCTCCTGT TGCCACTGCT
GCTCCGCCAC AGGCAGCAAC CGCCGTGCCT GTAGCGGTGT CGCAGTTCAA CGAAGCGCCC
GTCCTGGCGG AACTGGTCCA ACAGGGCAAA CTGCCGCCGG TCGATCAGCG CCTGCCCAAG
AATCCAGTGG TGCTGACCGG TCTCGATGGC GTTGGCAAAT ATGGCGGAAC CATCCGTCGC
GGCTTCCGCG GCTTTTCGGA CCGCTGGGGA CCGACCAAGA TTCAGAACGA GGGGCTGACC
TGGTATAACC CTGACTTAAG CCTGCGCGCG AACATCGTCG AGTCGTGGGA GGTCAGCAGC
GATGCGCGGC AGTGGACGTT CAAGCTACGC GAGGGGATGA AGTGGTCCGA TGGTTCGGAC
TTCACGACCG ACGACTGGAA ATGGTGGTAC GAGAACGTCC TGCTCAACGA TCAGATCACG
ACGGCGCTTC CCGGTGTTTG GTCAACCGGC TCACCGCGCG TGGCGATGAA AGCGGAGTTT
CCCGATCGCT ACACGGCGGT GTTCACGTTC CAGGACCCCA AGCCACTCTT CGCCTACAAC
GTCACCCGCG AGCAACCGTT CGTTCATGCC GGTTTCATGA AGCAGTTCCA CGAAGGCTTC
GCCGATAAAG CCAAACTTGA GGCGGATGCG AAGGCGGCAG GGTTCGAGAC GTGGGTGCAA
CTGTTCAACG ACAAAAATTG GTGGTGGACG GTCGGGCGTC CATCGCTCGG TCCGTGGGTA
GCCGTCAACA CCATGACCGA GCAGTTGTTC ATTATGGAGC GCAACCCTTA CTTCTGGCAG
GTGGATGAAG ATGGCAATCA GTTGCCGTAC ATCGACAAGA TCACCCACCT GCTGTTCGAG
ACGCCCGATG CCTTCAACAC GCGCATCATT GCGGGCGAGG TCGATTTTCA GGCGCGCCAC
GTGAGCATTG GCGACTTCAC ACTCCTCAAA GAGAATGAGA GTCGCGGCGA TTATCAGGTA
GTGCTGGGCG TCAGCGCCAA CCATATCGCT TTCCAGCCGA ATCACACGGC GAAGAACCCG
AAGATCCGCG AGTTCTTCCA GAACCGCGAC GTGCGCATTG CACTCTCATT GGCGATCAAC
CGCGACGAAA TCAACGAACT GGTCTTCAAT GGCACCGCTG TGCCGCGCCA GTACAGCCCG
TTGAGCATGT CGCCGCAGTA CTACGAGAAA CTGACGAAAG CGTATATCGA GTACGATCCG
GCGCGCGCCA ATCAACTGCT CGATCAGGCC GGCTACGACA AGAAGGATAC TCAGGGCTTC
CGCCTCTGGA AGGATGGCAG CGGTCCGATC AGTTTCATCA TTGAGGGCAC GGCGCAGGCG
GGTTCACCCG ATGAAGACGC CGTCCAGACG ATGATCAAGT ATTTTGCCGA TGTCGGCATT
AAGGCGACGT ACAAAGCGCA GGAACGTTCG CTGTACACCG AACGCTATCA GGCGAACGAG
GTCGAGGCGG CGTTCTGGGG TGGTGACCGG ACGCTGTTAC CCATCGTGGC GCCCTGGATT
TTCCTGGGGA GCATGATCGA CCGTCCCTGG GCTGCCGCGT GGGGAATCTA CTACAACAAC
CCGAATGACC CCAACGCTGA ACAACCGCCG GAGGGTCATT TCATCACCAA AATCTGGGAT
ATTCAGAAGC AGATCGATGT CGAGCCGGAC GAGGAGAAGC GCAATGCGCT CTTCCGTCAG
ATTCTCGACA TCTGGGCGGA GGAGTTGCCG ATGATCGGCA TCCTCGGTGA ACTGCCATCA
CCGACGATTG TGAAGAACGG CTTCAAAGGC TTCCGCGCCG GATTCCCCAA CGACGATACA
ACCGAGGACG AGAACCTGCT CAACACGCAG ACCTACTACT GGGATGATCC GGCAAAACAC
ACCAATTAG
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| Protein sequence | MNKNARRSIS RRNFLRLSAV LGASAGLAAC GGAPTAPAPT AAPSAPTAPP APTVAPVATA
APPQAATAVP VAVSQFNEAP VLAELVQQGK LPPVDQRLPK NPVVLTGLDG VGKYGGTIRR
GFRGFSDRWG PTKIQNEGLT WYNPDLSLRA NIVESWEVSS DARQWTFKLR EGMKWSDGSD
FTTDDWKWWY ENVLLNDQIT TALPGVWSTG SPRVAMKAEF PDRYTAVFTF QDPKPLFAYN
VTREQPFVHA GFMKQFHEGF ADKAKLEADA KAAGFETWVQ LFNDKNWWWT VGRPSLGPWV
AVNTMTEQLF IMERNPYFWQ VDEDGNQLPY IDKITHLLFE TPDAFNTRII AGEVDFQARH
VSIGDFTLLK ENESRGDYQV VLGVSANHIA FQPNHTAKNP KIREFFQNRD VRIALSLAIN
RDEINELVFN GTAVPRQYSP LSMSPQYYEK LTKAYIEYDP ARANQLLDQA GYDKKDTQGF
RLWKDGSGPI SFIIEGTAQA GSPDEDAVQT MIKYFADVGI KATYKAQERS LYTERYQANE
VEAAFWGGDR TLLPIVAPWI FLGSMIDRPW AAAWGIYYNN PNDPNAEQPP EGHFITKIWD
IQKQIDVEPD EEKRNALFRQ ILDIWAEELP MIGILGELPS PTIVKNGFKG FRAGFPNDDT
TEDENLLNTQ TYYWDDPAKH TN
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