| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2449 |
|---|
| Symbol | |
|---|
| ID | 5539930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3146131 |
|---|
| End bp | 3147492 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640894579 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001432547 |
|---|
| Protein GI | 156742418 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1486] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.234519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCG CCATTAAGAT CAGCGTGATC GGCGCCGGCA GCGCCCAATT CTCGCTGGGG
CTGGTCAAAG ATCTGTGTCT GACGCCAGGA CTCGCAGGCA GTCTGGTCAG TTTCATGGAT
GTCGATCTTG CCCGCCTTGA GATGATCGAG AAACTGGCGC GCCGCTATGC CGCCGAACTG
GGCTCCGATC TGCGCTTCGA GCGCACTGCG GATCGCGCCG CGTCGCTCAC CGACGCCGAT
TTTGTGATCA ATACCGCATC GGTCGTCAGC CACCATCATC AGCGCGCCAT GCGCGAGGTG
ACGGCGAAGC ACGGCTACTA TTACGGCGGC GTTGCTTTCG GCAATCACGC GCAACTGGCG
TTCATGCTCG CCGTGGCGCG CGATATGGAG CGCATCTGTC CAAATGCCTG GCTGATCCAG
TCGGGTAATC CGGTGTTTGA AGGATGCACG CTGATGACCC GTGAGACCGG CATTAAGGTG
TGTGGTCTGT GCCATGGTCA CTACGGTGTC TATCAGGTGG CTATGACCCT GGGATTAGAC
CCACAGAAGA TCACCTGGCA GGCGCCGGGG TTGAACCACA ATATCTGGCT GACCCATTTT
CTCTACGAAG GGAAAGACGC CTATCCGCTG CTCGACCGCT GGATCGCCGA ACAGAGCGAG
ACCTTCTGGC GCACCCATGT GGCGCAGAGC ACCCACGACA TTCAGATGTC GCGCGGCGCC
ATTCATATGT ACCGCATGTA TGGGTTGATG CCAATCGGCG ATACGCCGCG CCAGCAACGC
AACTGGTGGT ATCACACGAG CCTTGAGGTC AAGAAATACT GGTTCGGCGA ACCGTGGGGC
GGTCCCGACA CCGAGATTGC CCGTCCATTC TTCGTCGAGG GTCTGGAGAA GCGCATCGCG
TTCATGACTC AGCTGGCGAA CGATCCGAAA GCCAGCCTGG TCGAAACGTT CGGCAGCGAG
AAGACGCGCG AGCAGCAGGT TCCGATCATC GATGGGCTGG TCAACAACAA CGAGTATGTC
GCTCAGGTGA ACATTCCGAA CCACGGCGCG CTGCCCGGCG TTGCCGATGA TGTGGTGGTC
GAGGTTCCAG CAATCATCAA TGCCAAAGGT ATTCAACCGC TGCGCGTGCC ACCGTTGCCA
CGGAAGATTA TGCTCGAAAT GATTCTGCCC GAAGTGCTCG ATATGGAACG CGAACTCCTG
GCGTTCAAAA CCGGCGATCG CTCGATGTTG CTCTGGAGTG TGCTCAACAG TCCGCAGACC
CGCTCATATG AACAGGCGGT CGCCGTGCTC GATGATCTGC TGGCGATGCC CGGTCATGAG
GAACTGGCAA CGCATTTCCG GTGGCCGGAG ACATGGGAGT AA
|
|---|
| Protein sequence | MSTAIKISVI GAGSAQFSLG LVKDLCLTPG LAGSLVSFMD VDLARLEMIE KLARRYAAEL
GSDLRFERTA DRAASLTDAD FVINTASVVS HHHQRAMREV TAKHGYYYGG VAFGNHAQLA
FMLAVARDME RICPNAWLIQ SGNPVFEGCT LMTRETGIKV CGLCHGHYGV YQVAMTLGLD
PQKITWQAPG LNHNIWLTHF LYEGKDAYPL LDRWIAEQSE TFWRTHVAQS THDIQMSRGA
IHMYRMYGLM PIGDTPRQQR NWWYHTSLEV KKYWFGEPWG GPDTEIARPF FVEGLEKRIA
FMTQLANDPK ASLVETFGSE KTREQQVPII DGLVNNNEYV AQVNIPNHGA LPGVADDVVV
EVPAIINAKG IQPLRVPPLP RKIMLEMILP EVLDMERELL AFKTGDRSML LWSVLNSPQT
RSYEQAVAVL DDLLAMPGHE ELATHFRWPE TWE
|
|---|
| |