| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2345 |
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| Symbol | |
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| ID | 5539826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3025402 |
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| End bp | 3031011 |
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| Gene Length | 5610 bp |
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| Protein Length | 1869 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640894478 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001432446 |
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| Protein GI | 156742317 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.386383 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGATT TCCCAGAGTT TCCCGACAGC CTCAAAGCCC GCCTCGCCGC TGCCAACGTC
ACCGACGCCG CTGCTGTCCT GGCAATGCTG CTCGATGCGC TGCCGTCGAT TTCCGATATG
CAGCAACTCC GCGACCTGTG GCACATGGCG CCGGCGGAGG AAGAAGACGC CTTCCTCGCC
GCTGCCGAAC AGCGCGCCGC TGCCGCCGAA GCCTCTGGCG ACGCGGCGCG CGCCGCAGCC
CTGCGCGAAC GCATCAACGT GCTGCACGCC TATCGCGCCG AGATTGCGCA GAAGGGCGAA
ATCCTGCGCG CGGCGCTCGA ACGCCTGGAG GCTGCTGCGT CCGATGATGA CCTGAAGGCG
CTCTGGGGCG ATGTGCCGCT CGAATTGGAA GAACCCTTCC TGCAACTCGC CGAAGCGCGC
GCCGCTGAAC TCGATCAAAC CGGCGACGCG GCGCGCGCCG CAGCCCTGCG CGAACGCATC
AACGTGCTGC ACGCCTATCG CGCCGAGATT GCGCAGAAGG GCGAAATCCT GCGCGCGGCG
CTCGAACGCC TGGAGGCTGC CGCGTCCGAT GATGACCTGA AGGCGCTCTG GGGCGATGTG
CCGCTCGAAT TGGAAGAACC CTTCCTGCAA CTCGCCGAAG CGCGCGCCGC TGAACTCGAT
CAAACTGGCG ACCGCACAGC CGCCGTGCGC CTGCGCGAGC GAGTAACGAT GCTACGCCAG
GCGCGCGAAG CGCGTGAGAT TGCCAGAAGC ATGGTTCAGC AGGCGCTCGA ACGCCTGGAG
GCTGCCGCAA CCGACGACGA AGCCTGGCAG GTCTGGCTCG ATCTGCCGGT TGAACTCGAG
GAGTGGTTCC TTCAGAACGT TGCTGACCGC GCCGCTGAAC TCGAACAGAA CAACGAGCCG
CAACGCGCCG GACGGCTGCG CGTTGCGCAT GCCCGTATGC AGGCGGAACG CGCCCGCCGT
CACGAACAGA ACAATCACCC TGTCGCCCAG GCATTACAGG CATTCCTTCA AGCTCCGACC
GACGCCGACG CCACGCGGGT GTTCAATGAG CGCCGCGATC TGTTGCAGCC CTTCGAGGCG
CAGCGCGCGT TCGACGCCCT GGCGCAGCAG GCGCCGCCGG ATGCGCAGCC GTTGTTCGAG
GCGCGCGCGG CATTGCTGCG CTCCCTGCGC GGCGCCATGC CTGAGCCGCG CCCTGCACCG
TCTCCCGCGC TGCGCGGCGA ACCCGCGTTG CGCGCGCCGG AGTCGGCAGG CGCGCGCATC
TATATCAACG CGGCGAACGC TGAAGGCGGC GGCGATGCAA TCGTCGTGAA CAACATCGTC
ATTGAACGGC GCTGGACCCG CCCGCGCCCG GAGCGCCTGC CGATCGACAC TATCGAACGC
ACCTGCGCCC TGGATGAAGT CGCGCGTCTC CTCACCGAGC GTGGTCAACT GGCGATCACC
GGCGGGCAGC GCACGGCGTC GGCTGCCATC CAGGGCATGC CCGGCATCGG CAAAACCGTC
CTGGCGCGCC AACTGGCGCT GGCGCTCGAC GAACGCTACC CCGGCGGCGT GATCTGGGAG
GAGATCGGAC CGGAGATCAC CGCGCCGGAA GCGACGCAGC CCATCCTGAA CCGCTGGGCG
CGCTATGCGC TGAGCGTGCC GCCGCACCTC GACGACCGCA TCGCTTTCGA CGCCGGCGCG
GTGCGCGCGC TGTTCGCTGC GCAGGGGCAG CCGCTCCTCG TCATCCTCGA CAATGTCTGG
TCGCTGGAGG GCATTCGCTG GTTGCGCAGC GCGCTGCCGG ACAACGCCCA TCTCGTGATC
ACCACCCGCC TGGAGACGGT GATGGTCGGG CTGGGAGGCG GCGAATATGT GCTGGGGCTG
CTGACGCCAG ACGAAGCGCG CGCGCTGATT GCGCTACGGC TGGGATGGAA CGACCTGCCG
CCTGAGCATC ATGCATGGGC GGATGCGCTG GCGCAGGGAG TCGACCACCA TGCCCTGGCG
CTGGACATCG CCATCCGTCG CCTGCGCCTC GACGCTCGTT CGCCCGGAAC GGCGCGCTGG
CGCGAGCAGA TAGAACGGCT GCTGGGGCAC ATACGCAGCG GAAATGGGTT CGAGCGCCTG
GCGCTGCCGG ACGGCGAGCG CAACCAGAGC GTCGAAGCCG TGCTCGCCTA CAGTTACGCG
CAGATGGACG ACGCGGCGCG CGCGCGCTTC CGTGCGCTCG GCGCCTTCGC GCCGGAAGCG
TCGTTCGGCG TTGACGCGGC GGCAGCGCTC TGGCAGTGCG ATTGCGACGC GGCGGAGGAC
GGGCTGAGCG CACTGGCGAA CGCTGCGCTG CTGGAACCGG GCGATGGCGA CAGGCGCTGG
CGCCAGCATA CACTGCTGCG CGGCTACGCT CTGGCGTTGT TGCGGCGCGA CGGCGAACAC
GAGGCCGCCG CAGCGCGCCA TGCCGCATTC TACGCCGACG CCATGCGCGC CGCCGACGAT
GCGCAGCGCT TCTATGAACT GCTCGGCGAC TATCCGAACC TGCGGCACGC CTTCGCCTGG
GCGATTGAGA ACGATCTGGA CCTGGCGCAG AACCTGATCA ATAACAGCGC CAACCTTCAG
CGGTCGCACG GGTATGGGCG CGATGGACTG GAGTGGGCGG AACAGGCGCT GGCGCGCGCC
GTCCGTCGCG GCACGCCGGC GCATGTCGCG CGCGCGCAGG GATCGCTGGG CAACGCCCTG
CAACACGCCG CGACGCTGGC GGGGGAAGAC CGCGCCGCGC GGCTGCGCGC AGCGCTCGCC
GCCTACGACG AGGCGCTGCG CTTCTCTACC CCCGCCACGG CGCCGCTCGA CTACGCTATG
ACGCAGACCA ACCGGGGGAC TGTGTTGCAG GACCTGGCGA CGCTGGCGGG GGAAGACCGC
GCCGCGCGGC TGCGCGCAGC GCTCGCCGCC TACGACGAGG CGCTGCGCTT CTCTACCCCC
GCCACGGCGC CGCTCGACTA CGCTAGGACG CAGACCAACC GGGGGACTGT GTTGCAGGCC
CTGGCGACGC TGGCGGGGGA AGACCGCGCC GCGCGGCTGC GCGCAGCGCT CGCCGCCTAC
GACGAGGCGC TGCGCTTCTC TACCCCCGCC ACGGCGCCGC TCGACTACGC TAGGACGCAG
ACCAACCGGG GGACTGTGTT GCAGGCCCTG GCGACGCTGG CGGGGGAAGA CCGCGCCGCG
CGGCTGCGCG CAGCGCTCGC CGCCTACGAC GAGGCGCTGC GCTTCAGAAC CCCCGCCACG
GCGCCGCTCG ACTACGCTAG GACGCAGACC AACCGGGGGA CTGTGTTGCA GGCCCTGGCG
ACGCTGGCGG GGGAAGACCG CGCCGCGCGG CTGCGCGCAG CGCTCGCCGC CTACGACGAG
GCGCTGCGCT TCAGAACCCC CGCCACGGCG CCGCTCGACT ACGCTATGAC GCAGACCAAC
CGGGGGACTG TGTTGCAGGC CCTGGCGACG CTGGCGGGGG AAGACCGCGC CGCGCGGCTG
CGCGCAGCGC TCGCCGCCTA CGACGAGGCG CTGCGCTTCT CTACCCCCGC CACGGCGCCG
CTCGACTACG CTAGGACGCA GACCAACCGG GGGACTGTGT TGCAGGCCCT GGCGACGCTG
GCGGGGGAAG ACCGCGCCGC GCGGCTGCGC GCAGCGCTCG CCGCCTACGA CGAGGCGCTG
CGCTTCTCTA CCCCCGCCAC GGCGCCGCTC GACTACGCTA TGACGCAGAC CAACCGGGGG
ACTGTGTTGC AGGACCTGGC GACGCTGGCG GGGGAAGACC GCGCCGCGCG GCTGCGCGCA
GCGCTCGCCG CCTACGACGA GGCGCTGCGC TTCTCTACCC CCGCCACGGC GCCGCTCGAC
TACGCTAGGA CGCAGACCAA CCGGGGGACT GTGTTGCAGG CCCTGGCGAC GCTGGCGGGG
GAAGACCGCG CCGCGCGGCT GCGCGCAGCG CTCGCCGCCT ACGACGAGGC GCTGCGCTTC
TCTACCCCCG CCACGGCGCC GCTCGACTAC GCTATGACGC AGACCAACCG GGGGAATGTG
TTGCAGGCCC TGGCGACGCT GGCGGGGGAA GACCGCGCCG CGCGGCTGCG CGCAGCGCTC
GCCGCCTACG ACGAGGCGCT GCGCTTCTCT ACCCCCGCCA CGGCGCCGCT CGACTACGCT
ATGACGCAGA CCAACCGGGG GACTGTGTTG CAGGCCCTGG CGACGCTGGC GGGGGAAGAC
CGCGCCGCGC GGCTGCGCGC AGCGCTCGCC GCCTACGACG AGGCGCTGCG CTTCTCTACC
CCCGCCACGG CGCCGCTCGA CTACGCTAGG ACGCAGACCA ACCGGGGGAA TGTGTTGCAG
GCCCTGGCGA CGCTGGCGGG GGAAGACCGC GCCGCGCGGC TGCGCGCAGC GCTCGCCGCC
TACGACGAGG CGCTGCGCTT CAGAACCCCC GCCACGGCGC CGCTCGACTA CGCTAGGACG
CAGACCAACC GGGGGAATGT GTTGCAGGAC CTGGCGACGC TGGCGGGGGA AGACCGCGCC
GCACGGCTGC GCGCAGCGCT CGCCGCCTAC GACGAGGCGC TGCGCTTCTC TACCCCCGCC
ACGGCGCCGC TCGACTACGC TATGACGCAG GGTAATTTGC TGATCCTCTA TCAAACCCTG
GCGAATGAGC CGGGGGAGGA GCGCGCGACC CGCCTGCTGG AAGCGCTGCG CGCCGGCTGG
ACGGCGTTCC ACATGTTTAC GGCATTACAG CACGCTGAAT TTCAGCAACG GGCGATACGC
CAGCTTCGTG CTCTCCGCGC TGCCTGCGGC GCTGACTTCG ACGCGCTGTG GTCGTCGCTG
GACGCGGGTC CGCCGCCGGC GTGGCTGAGC GCTCCCGATG AACCGGACCT CCCGCAACCT
CTGGTCGATC TGCTGGAGCG CCTGGCTGCC GCTGGCGTAA CCGACGAGGC CGGTCTCCTG
GCTGCGCTGG AGGCTGACCC ACAGTTGCGC GCAGCGCTGT GGGCGCCGCT GGTGCAACGC
TTGCTGGCGG TGTCGTCTGG CGAGGAGTTG CTGGACTTCT GGCGCGCATT GCCCGCCGCA
CTGGAAGAAC CGCTGGCTGC CGCCGCCGAG GAATTCGCGC GGCAGGCGGA ACAGGCGGGC
GATGCGGCGC TGGCGCAGGC GCTGCGCGAG CGGGCTGAAG GGCTGCGCGC GATTCGCGCC
ATTGCCGACC AGCAGGCAAA CCCAATGCGC CAGGCTATCC AGCAGGCGTG GCAGCGTTAT
GTCGAACTTG TCCAGGCGGC GGAAGCGGCC GGGCATGATA TTGCCGCGTG GCAGGCGGCG
GTGGCGGCCG GCGAGGCGCT GCTCGCGCCG GAGTTCGCCG CCACGCCGGG GATTGACTGG
AGCGCTGTGC GCCAGATGGT TTCGTCCGCC TGTAATACTC TCGGCAACGC GCTCCACGAC
GCCGGTCGCG CCGCAGAAGC GCTCGCCGCC TACGATCGCG CCATTGCGCT GCAACCGGAG
GAAGCGATGT GGCGGTGCAA TCGCGTCGGT GCGCTGATCG ACCTGGGGCG GCACGACGAG
GCGGCGGAAG AACTCGCCCG CGCCCGCGCG CTCGAACCGG ACGCCGCGCG CCTGGCGGAA
CTCGAAGCGC GGCTGAGAGA TCAGCCGTGA
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| Protein sequence | MPDFPEFPDS LKARLAAANV TDAAAVLAML LDALPSISDM QQLRDLWHMA PAEEEDAFLA
AAEQRAAAAE ASGDAARAAA LRERINVLHA YRAEIAQKGE ILRAALERLE AAASDDDLKA
LWGDVPLELE EPFLQLAEAR AAELDQTGDA ARAAALRERI NVLHAYRAEI AQKGEILRAA
LERLEAAASD DDLKALWGDV PLELEEPFLQ LAEARAAELD QTGDRTAAVR LRERVTMLRQ
AREAREIARS MVQQALERLE AAATDDEAWQ VWLDLPVELE EWFLQNVADR AAELEQNNEP
QRAGRLRVAH ARMQAERARR HEQNNHPVAQ ALQAFLQAPT DADATRVFNE RRDLLQPFEA
QRAFDALAQQ APPDAQPLFE ARAALLRSLR GAMPEPRPAP SPALRGEPAL RAPESAGARI
YINAANAEGG GDAIVVNNIV IERRWTRPRP ERLPIDTIER TCALDEVARL LTERGQLAIT
GGQRTASAAI QGMPGIGKTV LARQLALALD ERYPGGVIWE EIGPEITAPE ATQPILNRWA
RYALSVPPHL DDRIAFDAGA VRALFAAQGQ PLLVILDNVW SLEGIRWLRS ALPDNAHLVI
TTRLETVMVG LGGGEYVLGL LTPDEARALI ALRLGWNDLP PEHHAWADAL AQGVDHHALA
LDIAIRRLRL DARSPGTARW REQIERLLGH IRSGNGFERL ALPDGERNQS VEAVLAYSYA
QMDDAARARF RALGAFAPEA SFGVDAAAAL WQCDCDAAED GLSALANAAL LEPGDGDRRW
RQHTLLRGYA LALLRRDGEH EAAAARHAAF YADAMRAADD AQRFYELLGD YPNLRHAFAW
AIENDLDLAQ NLINNSANLQ RSHGYGRDGL EWAEQALARA VRRGTPAHVA RAQGSLGNAL
QHAATLAGED RAARLRAALA AYDEALRFST PATAPLDYAM TQTNRGTVLQ DLATLAGEDR
AARLRAALAA YDEALRFSTP ATAPLDYART QTNRGTVLQA LATLAGEDRA ARLRAALAAY
DEALRFSTPA TAPLDYARTQ TNRGTVLQAL ATLAGEDRAA RLRAALAAYD EALRFRTPAT
APLDYARTQT NRGTVLQALA TLAGEDRAAR LRAALAAYDE ALRFRTPATA PLDYAMTQTN
RGTVLQALAT LAGEDRAARL RAALAAYDEA LRFSTPATAP LDYARTQTNR GTVLQALATL
AGEDRAARLR AALAAYDEAL RFSTPATAPL DYAMTQTNRG TVLQDLATLA GEDRAARLRA
ALAAYDEALR FSTPATAPLD YARTQTNRGT VLQALATLAG EDRAARLRAA LAAYDEALRF
STPATAPLDY AMTQTNRGNV LQALATLAGE DRAARLRAAL AAYDEALRFS TPATAPLDYA
MTQTNRGTVL QALATLAGED RAARLRAALA AYDEALRFST PATAPLDYAR TQTNRGNVLQ
ALATLAGEDR AARLRAALAA YDEALRFRTP ATAPLDYART QTNRGNVLQD LATLAGEDRA
ARLRAALAAY DEALRFSTPA TAPLDYAMTQ GNLLILYQTL ANEPGEERAT RLLEALRAGW
TAFHMFTALQ HAEFQQRAIR QLRALRAACG ADFDALWSSL DAGPPPAWLS APDEPDLPQP
LVDLLERLAA AGVTDEAGLL AALEADPQLR AALWAPLVQR LLAVSSGEEL LDFWRALPAA
LEEPLAAAAE EFARQAEQAG DAALAQALRE RAEGLRAIRA IADQQANPMR QAIQQAWQRY
VELVQAAEAA GHDIAAWQAA VAAGEALLAP EFAATPGIDW SAVRQMVSSA CNTLGNALHD
AGRAAEALAA YDRAIALQPE EAMWRCNRVG ALIDLGRHDE AAEELARARA LEPDAARLAE
LEARLRDQP
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