| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2317 |
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| Symbol | |
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| ID | 5539798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2986741 |
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| End bp | 2988759 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640894450 |
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| Product | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD |
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| Protein accession | YP_001432418 |
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| Protein GI | 156742289 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0328767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGAG CGACAGGCAC GCCAATGAGC GAACACCCGA TCATTCAGCG GCGCACAGCG
CCGCCTTCCG CCAGCGAGTC GCGGCGCGGC GCCGCTGTGA CGATGATCAT CTTCCACCAC
ACGCCGCTTC CCGCCGAACA GGCGATTGCA CGCTTCACGG CGCGCGCCAA CACCCGCGCA
CCTCACTACC ACGTCGCCGC TGATGGCACG ATCACGCAAT TGGTTGACGA AGCGCGCGCG
GCGCGCCACA GCGGTCTGGC AAAACTGGAT CGCGTGCGCA ACATTGACCG GATCAGCATC
GGCGTCGCCA TCGAGGGCGC GCCGCGCGTC GCCCTCCCAT CCGCTCAGGT GATTGCGCTG
CGCACCCTGA CGCTGGATAT TCAGCATCGT TACGACCTGT TGGCAGAAGC GGCGCTGCTC
TCCTGGTCGC CGCCGCGGGC TGGCGCCGCA TACGGCGCGC TCACTCCGTT CACGCTGCCT
CCCATGCCGG AAGCGCCGCC CTCGGCGCTC CTTGGGCTGC TGACGCTCGA TGACACACCG
GAACAACAAC GGGCGCTCTG GCTGTTCCTG CAGAACGAAA CAGCAGGTCG CGCCGGCGGC
TTCAATATCG GCGCTGCGTT TCACCTGCAC GCCGCAAGGC ACGGCTTCGG CGCGCCAATC
GCGCCCGCTT CGCCGCGATC CGCCTGGCTG ACGGTCAACG GGCGCCAGTA CAACTATCAG
CACTTCGCAC GCGACACAGT CTTCAACGAG GGAGAACGAT GGGCTGAGGT GCAGACCCTG
AGCGCCCTGA TCGCCGGCGC CTTTCCGGCG CCCGAAACGC TGGCCTTCGA GTTGCTGAAA
TCGGGCTTCG CCGCCGGCAT TGCCACAAGC GCATCAAAGA ACGGGAACAC GCAGTTCAAT
CCGGGTTGGG CATTTCATCG CCTTGCGGCA GAACAGCAGT TGGGTCCGCC GCTGAGCGGC
AGTTACCGGA TCACGGTCGC GGGGCAGCAG TACTCGGTGC AGGTCTTCTG CGGCGATACG
CTCTACACCC CGATCGCCGA CCCAGAAGCA AAGACGAACT GGAACGATGT GCGCCGGTTG
AGCGAAACGC CGGCCAGTCC GTTGCACGAA CACCTCTGGG CTGAAACGTA CAAAGCCAGC
AGGGTGGCGT ATGATTCGTC ATCGCCTTTC CATCAGGCGG CGGTTGCCGC CAGGATTGGC
GCGCCGCTGA CCGACGTCTG CCAGAAGGCG TTCCAGGGAA CGATGATCGC CATCCAGGTC
TTTGCGCTCG ATACGCTCTA TCGCATCGGC AATGGACCGA TCAGGCGCCA GAGTCAACTG
GCGCGTCCGC CGCAGGTCGA ACAGTGGCAA CCGAAACCGT CTTCACCGCC GCCGGTTGTT
GAACCTGTCG TCACCCGCGC GGTGACGGCG CCGGTTGGCG GCTTCCCGAT GCCGCCTGGC
GACCGCAGTA GCCCGAACTG GCCCCCGCCC CCGGATTTTA AGCCGCTCGT GACAGCAGCC
CAGCGACAGG CGCTGTTCGG CGCGTATGAA TTCACACCCG ATCCAAGCCG TGACCGGGAT
GGCATCCGCA TCCTGGGAAC ATGGGAACAG GAGAACATTG TAACCGTCCA GATACCGCAA
TTGATCGGGC GCAACATTCG CGGTGCGCCC GCCAATGGGT CAGTCCGCTG GCACCGTCTG
GCAGTCAATC AGTTGCTGCG GCTATGGAAA GCGTGGGAAG AGGCGGGATT GCTCGACCGT
GTGCTTATCT GGAATGGGTC GTACAGTCCG CGTTTCATCC GCGGGCGCAA GGACGATACC
GCCAACAGCC TGAGCAATCA CGCATTTGGC ACAGCCTTCG ACATCAACTA CGATCCGGCG
ACAAACCTCA ACGGATTGAA TGCTGTTCCC GCACTGGTCG GGCAGCATGG GTCGGTGCGC
GAACTCGCAG CGATTGCACG ACACTTCGGG TTCTACTGGG GCGGGCATTT TCCCCGGCTC
GATGGGATGC ACTTTGAAGT GGCGGTGTTG CAACCGTAG
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| Protein sequence | MDRATGTPMS EHPIIQRRTA PPSASESRRG AAVTMIIFHH TPLPAEQAIA RFTARANTRA
PHYHVAADGT ITQLVDEARA ARHSGLAKLD RVRNIDRISI GVAIEGAPRV ALPSAQVIAL
RTLTLDIQHR YDLLAEAALL SWSPPRAGAA YGALTPFTLP PMPEAPPSAL LGLLTLDDTP
EQQRALWLFL QNETAGRAGG FNIGAAFHLH AARHGFGAPI APASPRSAWL TVNGRQYNYQ
HFARDTVFNE GERWAEVQTL SALIAGAFPA PETLAFELLK SGFAAGIATS ASKNGNTQFN
PGWAFHRLAA EQQLGPPLSG SYRITVAGQQ YSVQVFCGDT LYTPIADPEA KTNWNDVRRL
SETPASPLHE HLWAETYKAS RVAYDSSSPF HQAAVAARIG APLTDVCQKA FQGTMIAIQV
FALDTLYRIG NGPIRRQSQL ARPPQVEQWQ PKPSSPPPVV EPVVTRAVTA PVGGFPMPPG
DRSSPNWPPP PDFKPLVTAA QRQALFGAYE FTPDPSRDRD GIRILGTWEQ ENIVTVQIPQ
LIGRNIRGAP ANGSVRWHRL AVNQLLRLWK AWEEAGLLDR VLIWNGSYSP RFIRGRKDDT
ANSLSNHAFG TAFDINYDPA TNLNGLNAVP ALVGQHGSVR ELAAIARHFG FYWGGHFPRL
DGMHFEVAVL QP
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