Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2234 |
Symbol | |
ID | 5539715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2881829 |
End bp | 2882752 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640894367 |
Product | peptidase M23B |
Protein accession | YP_001432335 |
Protein GI | 156742206 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.123525 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000684677 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAGAGAG CAATGTCTTT TGTCACGTCG CTAAAAATAT TCTTTGAGTA TCTCATCTCG GTTTTTATTT GGTCAATTTT CAATCCCTAT GGTTTAGTAC AAACTGTACG ACAAGCCACA GGACAATGTA TCGCCATCGG TCGAGCGTGT ATCAAAGGTG TCGTCTATGA CGATACGGTG AGTTTTGCGC TACCATTTGA AGGAACATGG AAGGTCGTTA ATGGTGGTAT TCGCAAACAA ACTTCCCATT CGTGGATTCT CGTCGGGCAA AGGTATGCGT ATGATTTTGT AGTTGTTGAT GAATCTGGAA AAACTTATCA AGATAGTACA GAAAAACCAA AAGATTACTT TGCTTTTGGC AGATCTATAA TTGCAGCAGA AGATGGAGTT GTGGCAGATG TGCGGGATAA CATCAGGGAT TACTTCCTCG CAGGAAAAGG TTGGGTAGAT ATAACAACCC CTGATATACG CGGAAACTAT GTTTTGATAA AGCATGACAC TGAGAGATAT ACACTTTATG CGCATTTGAA GGTAGGCAGC ATAACAGTGA AAAAAGGCGA GACGGTTGTC TCAGGGCAGA AGATAGGCGA GTGCGGGCAT TCGGGGCATT CTTCCGAACC TCATTTACAC TTTCAACTAC AAGATAGGGC AGATTTCTAC ACGGCGATAA GTTTACCTGT AAAGTTTAGG AATTTTGAGC GTTCAAAGGG TAACATCAAA GAATGTGTTG TATCAGGGTT TGTTGAAAGA GACTACCTGG TGCGCAACAT TGATCACTGT ACATCAGGGA TCATCGAAAC TACAGAGTTC ATCAAACCAA CAGGTTTCGA TCTTATTTGG AACGTTTTCA TTGTACTCCT TACGCTTTTC GGAATGTTCG CCATCGTAGC GCGAATGATC GAATTCATTC TTGACCGGTT ATAG
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Protein sequence | MERAMSFVTS LKIFFEYLIS VFIWSIFNPY GLVQTVRQAT GQCIAIGRAC IKGVVYDDTV SFALPFEGTW KVVNGGIRKQ TSHSWILVGQ RYAYDFVVVD ESGKTYQDST EKPKDYFAFG RSIIAAEDGV VADVRDNIRD YFLAGKGWVD ITTPDIRGNY VLIKHDTERY TLYAHLKVGS ITVKKGETVV SGQKIGECGH SGHSSEPHLH FQLQDRADFY TAISLPVKFR NFERSKGNIK ECVVSGFVER DYLVRNIDHC TSGIIETTEF IKPTGFDLIW NVFIVLLTLF GMFAIVARMI EFILDRL
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