| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2058 |
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| Symbol | |
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| ID | 5539538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2639603 |
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| End bp | 2641018 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640894194 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001432163 |
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| Protein GI | 156742034 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.469976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.844529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGAAC GCAAACGCAA CCAGATTTTG CTCGTTCTGT TTATCGGCGT CCTGATGGCG
GCGCTCGACA TTGCTATCGT CGGGCCGGCG CTTCCGGCGT TGCGCGAGCA CTTTCAGATC
GATGCGCGCG CGGCATCGTG GATGTTCGTT ATCTACGTGC TCCTCAATCT TGTCGGAACT
CCGTTTATTG CCAAATTATC GGATCGATTC GGTCGGCGTA TCCTGTATAC GGCAAGCATT
GCCCTTTTTG GTCTGGGGTC ATTGATTGTC GTCGCGGCGC CGGTGTATGC GGTGGTGCTG
GCAGGCCGGG CTATCCAGGG GCTTGGAGCC GGCGGCATCT TCCCGGTCGC CAGCGCGGTG
ATCGGCGATA CTTTTCCGCC GGAGAAACGT GGGAGCGCGC TTGGTCTGAT CGGCGCCGTG
TTTGGTATTG CGTTCCTGGT GGGACCGATT ATCGGCGGAT TATTGCTGTT GCTCGGATGG
CAGTGGCTGT TCCTGATCAA TCTGCCGATT GCAATGGCGC TGATCGGGTT TGGCGTGAAA
TTGTTGCCTG CCATACGCAC AGCGACACCG CGCCCCTTCG ATTGGGGTGG GACGGTTGTG
TTGGGTGTGC TGCTGGCGGC GCTGGCTGTG GCGCTCAGTG ATCTTGCCTA TCTGCTGGAA
GACGCCAGTG TGTCCGGTCT GGTCAATGCG TTGCGCACAT CCACGGTGGC GCCGCTGTTG
TTGCTGGCGC TGGCGCTGGC GCCGGTCTTC TGGTGGATCG AGCGCCGCGC TGAAGACCCG
GTGTTGGATC TGAACCTGTT CCGCAACCGG CAGATTGCGC TGGCCGGTGC GCTCTCGTTT
GGCGCAGGGT TGAGCGAGGC GGTGACGCTG TTCGTGCCAT CGTTGCTGGT GGCGGCGTTT
GGCGTCACAC CATCGACGGC GAGTTTTATG CTGATCCCGA TGGTGCTGGC AATGGCGATT
GGTTCGCCGT TGTCGGGGCG CGCGCTGGAT CGGGTTGGTT CAAAGATCGT TGTGCTCACC
GGCACCGCCT TGATTGCCGC CGGGTTGGTG CTGGAAGGCA CGCTGGCGAA CGTTTTGCCG
GCATTTTATG GATTCTCTGC ACTGTTCGGC ATTGGCATCG GTGTCTTGCT CGGCGCGTCG
CTGCGGTATA TTCTGTTGAA CGAAGCGCCG GCCGAAGAGC GAGGCGCAAC CCAGGGAGTG
CTGACGGTGT TCATCAGTAT CGGGCAGTTG ATTGGCGCCG TTTTGCTGGG CGCCATAGCA
GCCGCACGCG GCGGCGATGT CGGTGGCTAT GCTTTTGCCT TCCTCGTGGT CGGCGTCCTG
ATGGCAGTGT TGTTCATCGC ATCGTTTGGG TTGAAGAGTC GCGCCCAGGA ATTGGCGACG
CAGCAGCGTT TGCAGCGCGG CGCATCGATG GCATGA
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| Protein sequence | MDERKRNQIL LVLFIGVLMA ALDIAIVGPA LPALREHFQI DARAASWMFV IYVLLNLVGT
PFIAKLSDRF GRRILYTASI ALFGLGSLIV VAAPVYAVVL AGRAIQGLGA GGIFPVASAV
IGDTFPPEKR GSALGLIGAV FGIAFLVGPI IGGLLLLLGW QWLFLINLPI AMALIGFGVK
LLPAIRTATP RPFDWGGTVV LGVLLAALAV ALSDLAYLLE DASVSGLVNA LRTSTVAPLL
LLALALAPVF WWIERRAEDP VLDLNLFRNR QIALAGALSF GAGLSEAVTL FVPSLLVAAF
GVTPSTASFM LIPMVLAMAI GSPLSGRALD RVGSKIVVLT GTALIAAGLV LEGTLANVLP
AFYGFSALFG IGIGVLLGAS LRYILLNEAP AEERGATQGV LTVFISIGQL IGAVLLGAIA
AARGGDVGGY AFAFLVVGVL MAVLFIASFG LKSRAQELAT QQRLQRGASM A
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