| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1977 |
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| Symbol | |
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| ID | 5539455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2532265 |
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| End bp | 2534517 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640894112 |
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| Product | CRISPR-associated Csm1 family protein |
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| Protein accession | YP_001432083 |
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| Protein GI | 156741954 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
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| TIGRFAM ID | [TIGR02578] CRISPR-associated protein, Csm1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.757339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.306221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGAGGTG GTATGCACGA ACTTGCGCAT CGCGCAGCGC TCGAGGCGCT GCGCTTCTGG
GTGGCGGCGG CGAACAGGGA ACATGCGCCC GCAGCGCCGG ACGCTGCGTG TGATGTGGTG
GATCGCGCTG CGCGGTTCGT CTGTGGCGGC GATGCTCCGC CGTGCCTTGA TCTGACACGA
CCGCTCGCAA CGGTCTTTGG GAGTCTTCAA GGGGCGTCGG CGGCATATGT GCGCCGCGCG
CCGCTGGCGC TGACCGATGA CATCCTCTTC CCGTCGACGG ACGCGCGCGT TGACACGGCA
GCCACCGACC GGCTGCGCGC GGCGTTGCGC GCAGCCGACA ATCAGAGCGC GCACCTGCCG
CTCGCGCCAC GCATCGAGGC GCTCTTCTTC GCGTTTCAGC GGTTCGCCTG GTGTCTCCCT
TCGCCCCTTG CCGGCGTGTC GCTGTACGAC GCGGCGCGTA TCCACGCAGC CGTCGCGGCG
GCGCTGACCG CCGATTCCGG TCTGCTCCTC GTTGGCGGTG ATGTGTCCGG GGTGCAGGAG
TTTATCTACT CGATCAGCGC TGCCGGTGCG ACCCGCCAGC TGCGCGGGCG GTCATTCTAT
CTCCAATTGC TGACCGAGGC ATGCGCGCAC TATGTGTTGC ACCAGGCGGG GATGCCGTTC
TGTAATCTGT TGTACGCCGG CGGCGGTCGC TTTTATGTGC TGCTTCCTGC GTCGTTCGAG
TCGCGTCTTG GCGAATGGCG GCGCGCCATC GGCAGACTGC TCCTTGATGC GCACGGCGGC
GCGCTCTACC TGGCAATCGG CGGAGTGCGC TTCGCGCCGC ATGACTATAG CGAATCCACC
TGGCAGGAGT TGACGCGCCG AATCGACGAC GTGAAACGTC GCCGTTTTGC CGACCTCGAT
GATGCGACGT TCGCCCGGTT GTTCGAGCCG ACGCAGCCGG AGCCGCCGCC GGACGTTGAA
GAGCAATCCG CCGAACCGCT CGACGCCATG GGCGAGTCGC TCGCAGACCT GGGGCGGCAA
CTGGCGCGTG TGGCGCTGCT GTCGGTCGAG CCGGTGGAAC CGCGCGCCGT CTCCTTTGAT
CGCGGCAAAG CGGGCTGGAA CGACGTGCTG CGCGTGCTCG GCTTGAACGT CGAGCTGCTC
GACCATCTGT GTGCTTATCG CGTTGACCAC TCCCGGCGTC GGCGGGTGCT GCTGATCGAT
GACCGTGATC CGCAGTCTAT CGCCCTCGGA CCACAGGACG TCGTCGGGAC GCGCTACACG
GTCGCAGTGG CGCAACTGGC GACGGATCGC GATGTTGCGC AGTATCAGGC GCTCGAACGC
GATGCTGGCG ATGAGCAGAC GTTGCGCGTC GGCGATGTCA AGCCGTTCAA TCTGCTGGCG
GAACAGAGCA TCGGCGCGCG GCGGATGGGC GTGCTGCGCA TGGATGTGGA CGATCTCGGC
GATCTGTTTG GGCGACGCCT GAGTCGCCCG TCGGGTCTGG CGGGTCTGGC TGTGACGGCA
GCGCTCAGCA CAACGTTGAG CCGCTACTTC GAGGGATGGG TCGGTGAACT GTGTCGCCGC
GCCAATGATG ATGGCGGCGC CGGCGGGGTA TATGCCGTCT ACAGCGGCGG CGACGATCTC
TTCCTGGTGG GATCGTGGCA TCGGATGCCA CGCCTGGCGC AGCAGATTCG CAACGATTTT
GCGCGCTACG TCTTGGGGCG CGCGCCCAAT GCCGGCGAGA CGCTGCCGAT CACGCTGTCG
GGCGGGATCA CGCTGCACGC GGCGCGCTAT CCGCTCTACC AGGCTGCCGA TGATGCTGCT
GAAGCGCTCG ATGCCGCGAA ACGCCATGCG CGTCCCGACC GGCACGCCAA GGATGCGGTG
ACTTTCCTGG GACGCACTCT GGGCTGGGAG CATTTCGGCG AAGCGGCGGA CCTGTGCGCT
GCCCTCGTCG ATCTGGTGCA GGCGCAGGGT GTGCCGCGCA GCCTGCTGAT GGTCATTCAA
ACGCTCGACG CGCGCTTTCG GCAGGAGCAG CGCCGCAACC GCAGTGGCGC CGCGCAGTTC
GCCTATGGTC CGTGGGTATG GCAGGGGGCA TACCAGTTGA CGCGCGTTGC CGAACGATCA
CCAAACGGGG TCAAAGCGCA GATTGAGCGC CTGCGCGACC GGATCGTCGG CAATGAAGGC
GTGCCGCAAC GGTTCATCGA GCGGGCGGGA CTCGCTGCGC GCTGGGCACA GTTACTGGTT
CGTGAACGCA GCAATGCAAA GGAGGAACGA TGA
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| Protein sequence | MGGGMHELAH RAALEALRFW VAAANREHAP AAPDAACDVV DRAARFVCGG DAPPCLDLTR
PLATVFGSLQ GASAAYVRRA PLALTDDILF PSTDARVDTA ATDRLRAALR AADNQSAHLP
LAPRIEALFF AFQRFAWCLP SPLAGVSLYD AARIHAAVAA ALTADSGLLL VGGDVSGVQE
FIYSISAAGA TRQLRGRSFY LQLLTEACAH YVLHQAGMPF CNLLYAGGGR FYVLLPASFE
SRLGEWRRAI GRLLLDAHGG ALYLAIGGVR FAPHDYSEST WQELTRRIDD VKRRRFADLD
DATFARLFEP TQPEPPPDVE EQSAEPLDAM GESLADLGRQ LARVALLSVE PVEPRAVSFD
RGKAGWNDVL RVLGLNVELL DHLCAYRVDH SRRRRVLLID DRDPQSIALG PQDVVGTRYT
VAVAQLATDR DVAQYQALER DAGDEQTLRV GDVKPFNLLA EQSIGARRMG VLRMDVDDLG
DLFGRRLSRP SGLAGLAVTA ALSTTLSRYF EGWVGELCRR ANDDGGAGGV YAVYSGGDDL
FLVGSWHRMP RLAQQIRNDF ARYVLGRAPN AGETLPITLS GGITLHAARY PLYQAADDAA
EALDAAKRHA RPDRHAKDAV TFLGRTLGWE HFGEAADLCA ALVDLVQAQG VPRSLLMVIQ
TLDARFRQEQ RRNRSGAAQF AYGPWVWQGA YQLTRVAERS PNGVKAQIER LRDRIVGNEG
VPQRFIERAG LAARWAQLLV RERSNAKEER
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