| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1960 |
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| Symbol | |
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| ID | 5539438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2509708 |
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| End bp | 2511285 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640894095 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001432066 |
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| Protein GI | 156741937 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGCTCG AACAGAAACC AGCAACGATC AGCGCATCAC AGCCGGTCCA GGAACGCGGC
ATCTCCGCCT GGCTTCAGCA GCCACAGGCG GCGCTGGCTC TGGTCTGCGC CGCTGTATTC
GTTGGCGCTG TCGATCTGAC AATTGTGACA GCGGTTCTGC CGAAGATCAT GGTCGATCTG
AGCGTCTCAA TCGAAACCGA ACTGCACCGC GCTTCGTGGA TCATTACCGG GTATCTGCTT
GCCTACACCA TCAGCATGAC CTTTACCGGT CGCCTGTCTG ACCTGTACGG GCGCCGCGTC
GCCTACATGA TCTGCCTGAC CATTTTTACC ATTGGCTCGA TTGTGGTTGC GGTCGCGCCG
GCGCTCGAAG AGGTGGTCCT GGGACGGGTG GTGCAGGCGC TCGGCGCGGG AGCGCTGGTG
CCGATCTCGA TGGCGCTGGT GAGCGATCTC TTCCCGCCGG AGCGGCGTCC GGCGGCACTG
GGGGTGATCG CCGCCGTCGA CACTGCCGGA TGGATGGTGG GACATGTCTA CGGCGGCGCG
CTCATGCGGT TATTCGATGA CTGGCGGCTG CTGTTCTGGC TCAATGTGCC ATTTGGTATC
ATTGCTCTGG CGTTGACCTG GCTGGCACTA CGGCGGCTGG TCATCACCCG CGCAGCAGGC
AGTTTCGATT GGCGCGGTGC GGTGTTGATC TCGCTCAGCC TGACAGCATT CAACATCGGC
ATGGGCGCCG GCGCCGAGTT GGGGCAGACC GATTTTTATG GCGACCGTCC CGGACCACCT
CCATATGCGT TGCCCTTGAC CCTGGCGTCG CTGGTTGTGC TGGCGGCGTT CATCTGGGTC
GAGCGGCGGG CGCGCGACCC GCTGCTCGAT CTGACGCTCT TCCGTCAGCG CGGAACGGTT
GCGGCATCGA TCATGAATGT ATTGATCGGG TTCGTGCTGG CGCTGGCGAT TGCGAATGTG
CCACTGTTCA TCAATACCCG CCTGGGGCTA CTCTACCCGA CCGACCCGGA CATCCTGCGG
CGAGGCGCGT GGGAGACTGG TCTGGTGCTG TCGGCGCTGA CCCTGGCGCT GGCGCTGCTG
GCCTGGCCTG GTGGTCGCCT GGCGGGACGA TTCGGCGAAC GCCTTCCGGC GCTGATCGGG
CTGGCAGTGG CAACCGCAGG ATACCTGGCA ATGAGCCGCT GGCAATCGGA CACTGATTAC
GGGACGATGG TCGGCGGGCT GACACTGGCA GGCTGCGGCA TCGGTATGGC GCTTGCACCC
ACGGCTTCGG CAATTATCAC GGCTGCCGGA CCCAACCGAC GCGGCGCGGC GTCGGCGCTG
GTCATCATCC TGCGACTGAT CGGCATGACC GCTGGCGTCT CAACGCTGAC GTTGTGGGGT
GTGCAGCGCC AGGATGCGCT GCGCCGCACA GCAGACCCGG CGCTGCTGGC AGACTTTGAT
CAGGTACGGA TGTTTTTGAT CGATGTGGCG GCGCAGGTCG TGGGTGAAAC ATTCCTCTTC
GCCGTCGCAG CGTGCGCGCT GGCGCTCATA GCCGCAATCT GGCTGCCGGG GCGCGCCGTC
AGGGAAGCGT CGGGGTAA
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| Protein sequence | MTLEQKPATI SASQPVQERG ISAWLQQPQA ALALVCAAVF VGAVDLTIVT AVLPKIMVDL
SVSIETELHR ASWIITGYLL AYTISMTFTG RLSDLYGRRV AYMICLTIFT IGSIVVAVAP
ALEEVVLGRV VQALGAGALV PISMALVSDL FPPERRPAAL GVIAAVDTAG WMVGHVYGGA
LMRLFDDWRL LFWLNVPFGI IALALTWLAL RRLVITRAAG SFDWRGAVLI SLSLTAFNIG
MGAGAELGQT DFYGDRPGPP PYALPLTLAS LVVLAAFIWV ERRARDPLLD LTLFRQRGTV
AASIMNVLIG FVLALAIANV PLFINTRLGL LYPTDPDILR RGAWETGLVL SALTLALALL
AWPGGRLAGR FGERLPALIG LAVATAGYLA MSRWQSDTDY GTMVGGLTLA GCGIGMALAP
TASAIITAAG PNRRGAASAL VIILRLIGMT AGVSTLTLWG VQRQDALRRT ADPALLADFD
QVRMFLIDVA AQVVGETFLF AVAACALALI AAIWLPGRAV REASG
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