| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1879 |
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| Symbol | |
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| ID | 5539357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2412968 |
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| End bp | 2414326 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640894016 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001431987 |
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| Protein GI | 156741858 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.29051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCA AACTCTCACG ACGCAGGTTC CTCAAGGTTG CTGCCGCAGG CGCGGGCAGC
ATTGGCGCAG CAGCGCTGCT GGCGGCGTGC GGCGGCGCGG CGCCGCAGGG CGGGCAACCG
ACAGGCGGGC AGGCGCAACC TGCCGCGCCG GTTCAGGGTG ACGCCGTTGT CACCGAGATC
ACCTTCTGGT GGTGGGATCA GGTCGGTGAG GTGTGGAAAG AACCGTTTGA GAAGGCGCAC
CCCAACATCA AACTCAACTT CGTCAACACC CCCTTCGCCG ACGCGCACGA CAAACTCCTG
ACCTCCTTCG CCGCCGGAAG CGGCGCTCCC GATGTCGCTT CAATTGAGAT CGGGCGTGTC
GGCAATTTCA CCGCCAAAGG CGGCCTCGCC GATCTGCTGG CGCCGCCGTT TGATGCCGGC
AGCCTGAAGA ACGATATGGT TGCCTACAAG TGGACACAAG GCTCCACTGC CGATGGCCGT
CTCGTCTGCC TGCCGTGGGA CATCGGACCG GCTGGCGTTT GGTACCGCAC CGACATTTTC
GAGGCGCTTG GGTTGCCAAC CGATCCAGAG GCGGTCGAGG AGTTGATCGG CGGTCCCAAC
CGCACGTGGG ACGACTTCTT CGCGTTCGCA AAGCAACTGA AAGAGAAGAG CGGCGGCAAG
ACCTCGCTCT TCGCCGATGC CGGCACCGAC ATCTATGGCG CCGTTTACCG CCAGCAGGGT
GAGGGATATG CCGATGGCAA CAAAGTGCTG ATCGAAGAAA AGGCGACCCG TCCATTCCAG
CTGGCTGCGC GCGCGCGCAA AGACGGGATC GATGCCAATA TTCCCTGGTG GGGCGCCGAG
TGGCAGACCG GCTTGAAAGA CAACGCCTTT GCCGGGATGG TCATCGCATG CTGGATGCAG
GGCGGGTTGA CGCGTGAGCA GCCCGATCTG GTTGGGAAGT GGCGCGTGAT ACGCGCTCCA
GAAGCCAACT ATAACTGGGG CGGCTCGTTC ATGGCGATCC CGGAGCAGAG CAAGAATAAA
GAAGCCGCCT GGACCTTCGT CAAATGGGCA TGCGCAACGG CAGAGGGGCA GAACATCATG
TTCAAGGCGT CGGGTGTGTT TCCGGCATAT AAGCCCGCCT GGCAGGACCC GCTGTACGAT
GAGCCGGTGC CGTTCTTCGG CGGTCAGCGC GCCTATCGTC TCTGGACGGA GATCGGCGAC
AACATCAAGG CGATTTTCCG CACGCCGCAC GATCTCCAGC TCGATGACAT CGTTGGCGCG
GAATTGACCA AAGTGCTGCA AGAAGGGAAA GACCCCGTCC AGGCGGCGAA AGACGCCGAG
GCGGAAGCGA TTCGGCGCAT TCCCGATATG CAGGCGTGA
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| Protein sequence | MTTKLSRRRF LKVAAAGAGS IGAAALLAAC GGAAPQGGQP TGGQAQPAAP VQGDAVVTEI
TFWWWDQVGE VWKEPFEKAH PNIKLNFVNT PFADAHDKLL TSFAAGSGAP DVASIEIGRV
GNFTAKGGLA DLLAPPFDAG SLKNDMVAYK WTQGSTADGR LVCLPWDIGP AGVWYRTDIF
EALGLPTDPE AVEELIGGPN RTWDDFFAFA KQLKEKSGGK TSLFADAGTD IYGAVYRQQG
EGYADGNKVL IEEKATRPFQ LAARARKDGI DANIPWWGAE WQTGLKDNAF AGMVIACWMQ
GGLTREQPDL VGKWRVIRAP EANYNWGGSF MAIPEQSKNK EAAWTFVKWA CATAEGQNIM
FKASGVFPAY KPAWQDPLYD EPVPFFGGQR AYRLWTEIGD NIKAIFRTPH DLQLDDIVGA
ELTKVLQEGK DPVQAAKDAE AEAIRRIPDM QA
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