| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1874 |
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| Symbol | |
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| ID | 5539352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2402803 |
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| End bp | 2405490 |
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| Gene Length | 2688 bp |
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| Protein Length | 895 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640894012 |
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| Product | alpha-L-rhamnosidase |
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| Protein accession | YP_001431983 |
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| Protein GI | 156741854 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.881972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTAT TCACCGTCGG ACACCTGCGT TGTGAGTATC TGGAAAACCC GCTGGGCATC
GATGTAACTC GACCGCGCCT GAGTTGGCGC CTCTTTAGCA ACCGGCGCGG CGCGCGGCAG
ACGGCGTACC GCATTGTGGC CGCACCATCC GCCGATGATG TCGCGGCGGA ACAGAACCTC
CTCTGGGATA GTGGTCGCGT CGAGTTGGAT CGGTCGATCC ATGTGGTCTA CGAAGGCGGA
CGACTCCGCT CGCGTCAGCG CGTCTTCTGG CGAGTGCAGG CATGGGACGA GCACGGCAAC
GTCGCCGTCA GCCCGGTTGC CTGGTGGGAG ATGGGGTTGC TGCGCCGTTC GGACTGGACG
GCATCGTGGA TCGGGGCGCC GCTCGTCGGC GGACGCTGGA CGACAATACC GGCGCCGTTC
CTGCGCCGCT CGTTCACGCT CGATGCGCCG GTGATGCAGG CGCGTCTGTA CATTACAGCG
CTGGGTCTGT ACGAATGTAC GATCAATGGG CAGCGCGTCG GACAAGACCT CTTCACACCT
GGGTGGACGG ACTATCGTCG ACGGGTGCAG TATCAGGTCT ACGATGTGAT CGATCTGCTG
CGCGAGGGCG ACAATGTGAT CGGCGTCATC CTGGGAGATG GCTGGTACTG TGGGCATGTG
GCATGGGCGG GTCGCCAGAA CTACGGCGAC CGCCCGAAAC TGTTGGCGCA ACTGATGATT
ACCTGCGCCG ACGGCAGCAC GCAGACGATG GTCAGCAACC GCTCCTGGCG ATACGCCTTC
GGTCCTGTGC TGGAGAGCGA CATGCTGCAC GGCGAGAGTT ACGATGCCAG GCTCGAAATG
CCCGGCTGGA ACATGCCCGG TTTCGACGAC TCCTCCTGGC AACCGGTGGA ACTCTTCGCC
GCGCCCGACG CCGCCCTGGT CGCTACGCGC GGTCCGACAG TGCGGCGGCA CGAAGAAGTG
CGCCCGGTCG GTCCACCAAC CGCCTTCCGT TCGCACCAGG CAACGCGCTG GGTCTTTGAT
CTTGGCCAGA ACATGGTCGG CTGGGTCCGA TTGCGTGTGC GGGGTCCGGC GGGGACAACC
GTCACCATCC GCCACGCTGA GGCGCTGAAC CCGGACGGCA CCATCTACAC CGCCAATCTG
CGCAGCGCGC GCGCGACCGA CCACTATACC CTGCGCGGCG AGGGTGAAGA AAGTTGGGAG
CCGCGCTTCA CCTTCCACGG CTTCCGGTAT GTCGAACTCT CTGGCTACCC CGGCGAACCC
GACATCGATG CGGTGACAGG CATCGTTGTG CATTCCGCCA CGCCGCCAAC CGGTGAGTTC
AATTGTTCCG ACCCGCTGAT CAACCAGTTG CAGCATAATA TTGTGTGGGG ACAGAAAAGC
AACTTTCTCG ACGTTCCGAC CGACTGCCCG CAACGTGACG AGCGCCTGGG ATGGACCGGC
GACGCGCAGG TGTTCATTCG CACCGCAGCG TTCAACATGA ATGTCGCGTC GTTTTTCACG
AAATGGACGC AAGACCTGGA GGACGCCCAG AGTCCCGAAG GGGCGTACCC GCCGGTGGCG
CCGCTGGCGG GTATCAGCGG ATTGACCGAT GGCGGACCGG CATGGGCGGA CGCGGGCATT
ATCTGTCCCT GGACGATCTA TCTGTGCTAC GGCGATGCCC GTCTGCTCGA AACGCACTAC
CCTTCGATGC AACGGTTCAT CGAATACCTC GAGCGGAGCA GCCGCGACTT CATCCGCTGC
TACGAGGACT ATCCCGGCTT TCGCGGCTTC GGCGACTGGC TGGCGCTCGA CGGAAGCGGC
AAGGTTGACG GCGGCACTGC GAAAGACCTG ATCGGCACGG CATTCTTTGC GCATTGCGCC
CGGCTGATGA GCCGCATTGC CGCGATCCTG GGGCATCAGC GTGATGCCGC GCGCTACCGC
CGATTGTTCG AGCGGGTGCG GCAAGCATTT GTCACACGCT ACGTCACCGG CGCGGGGCGC
GTGGCCGGCG AAACGCAGAC CGGATATGTC CTGGCGCTGC ACTTCGACCT GCTGCCGCCG
GAGTTGCGCC CGGCAGCAAC GGACGCGCTG GCGCGCGACA TCCTGGCACG CAATACTCAT
CTGTCCACCG GTTTTGTTGG AACGCCTTAC CTGCCGCATG TGCTGACCGC TGCCGGACGA
CTCGACCTCG CGTATGCGCT GCTGTTCCAA CAAACCTGGC CCTCGTGGCT CTACCCGGTC
ACACAAGGCG CCACGACGAT CTGGGAACGC TGGGACGGAT GGACGCACGA TAAAGGGTTC
CAGGACCCCG GCATGAACTC ATTCAACCAC TACGCCTATG GCGCCATCGG CGAATGGCTG
TATGCCACCG TTGCCGGCAT CGACACAGAC CCGGAGCAAC CGGGATACCG TCATCTGATT
CTGCGCCCGC AGCCAGGAGG TGGGCTGACA GCGGCGCGCG CGGCGCTCGA AACGATGTAC
GGGCGCGCCG TGAGCGCCTG GCGCATCGAC AATGATCGCT TCACATGGGA AGTCGTTGTG
CCGCCGAACA CGACGGCAAC GGCGTATGTT CCAGCGCCAG AAGGAGCGAT GGTGCGGGAG
AGCGGGCAAG CGGCGGATGA AGCGGAGGGC GTCACCTTCG TAGAGCGCAA CGAAGAGACA
GCGATCTACC GCCTGACGGC AGGGGCATAC ACATTTACGG TGGGGTAG
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| Protein sequence | MTLFTVGHLR CEYLENPLGI DVTRPRLSWR LFSNRRGARQ TAYRIVAAPS ADDVAAEQNL
LWDSGRVELD RSIHVVYEGG RLRSRQRVFW RVQAWDEHGN VAVSPVAWWE MGLLRRSDWT
ASWIGAPLVG GRWTTIPAPF LRRSFTLDAP VMQARLYITA LGLYECTING QRVGQDLFTP
GWTDYRRRVQ YQVYDVIDLL REGDNVIGVI LGDGWYCGHV AWAGRQNYGD RPKLLAQLMI
TCADGSTQTM VSNRSWRYAF GPVLESDMLH GESYDARLEM PGWNMPGFDD SSWQPVELFA
APDAALVATR GPTVRRHEEV RPVGPPTAFR SHQATRWVFD LGQNMVGWVR LRVRGPAGTT
VTIRHAEALN PDGTIYTANL RSARATDHYT LRGEGEESWE PRFTFHGFRY VELSGYPGEP
DIDAVTGIVV HSATPPTGEF NCSDPLINQL QHNIVWGQKS NFLDVPTDCP QRDERLGWTG
DAQVFIRTAA FNMNVASFFT KWTQDLEDAQ SPEGAYPPVA PLAGISGLTD GGPAWADAGI
ICPWTIYLCY GDARLLETHY PSMQRFIEYL ERSSRDFIRC YEDYPGFRGF GDWLALDGSG
KVDGGTAKDL IGTAFFAHCA RLMSRIAAIL GHQRDAARYR RLFERVRQAF VTRYVTGAGR
VAGETQTGYV LALHFDLLPP ELRPAATDAL ARDILARNTH LSTGFVGTPY LPHVLTAAGR
LDLAYALLFQ QTWPSWLYPV TQGATTIWER WDGWTHDKGF QDPGMNSFNH YAYGAIGEWL
YATVAGIDTD PEQPGYRHLI LRPQPGGGLT AARAALETMY GRAVSAWRID NDRFTWEVVV
PPNTTATAYV PAPEGAMVRE SGQAADEAEG VTFVERNEET AIYRLTAGAY TFTVG
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