| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1830 |
|---|
| Symbol | |
|---|
| ID | 5539308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2339041 |
|---|
| End bp | 2339838 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640893968 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001431939 |
|---|
| Protein GI | 156741810 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3694] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCGA TCTCTCTTCG GTTGATCGGC GCGCGCATCC GATCACAGAT GCAGTACAAA
ACCTCGTTCT GGCTCGACCT TGTGGGGACG GCGGTCTCCA CTGGCATGGA GTTCGTTGTG
TTATTTCTGC TGCTCCAACG CTTTACACTG ATTGGTGGCT GGCGGCTCCA CGAGATCGGG
CTGTTGTACG GTCTGACCTC GGTATCGTTT GGGCTGGCGG AGATGATCGG ACGCGGCTTC
GATAGTCCTT TCGAACGATT GATCCAGCAT GGTGACTTCG ATCGGGTGCT GACCCGTCCC
CTGAGCAGTT TTGTTCAGGT GCTGGCGTCC GAGGTTCAGT TGCGACGATT AGGGCGGGCT
GTGCAGGGTG CGGGGGTGCT GATCTTTTCA CTGGCTCAGG TGGAAGCGTT CTGGACCCCA
GTGCTGCTGT TGTTGCTTCT GCTGAGCATT CTGTCGGGCG CCCTCATCTA TGTGGGGCTG
ATCGTCATCG GCGCCACAAT CTGTTTCTGG ACGATCAAGA CTCCCGAGGT CATCAATGTG
TTCACGTTTG GCGGGCAGCA GTTGACAAGC CTGCCATTGA GCATTTACGA CCGGTGGATA
CGCGCGGTAT TTCTTTCGAT TGCACCCGTC GCGTTCGCCA GTTATCCGGC GGCATTGGTA
ATTCTTGGGC GGAGCGACCC GCATGGGTTG CCCGCCTGGA TTGCATGGTG CGCCCCGGTG
GTTGCCAGCG TATTTTTTGC CGCTGTTCTG GGGTTCTGGC AGATCGGCGT GCGCCGGTAC
CAGAGCACCG GAACCTGA
|
|---|
| Protein sequence | MLAISLRLIG ARIRSQMQYK TSFWLDLVGT AVSTGMEFVV LFLLLQRFTL IGGWRLHEIG
LLYGLTSVSF GLAEMIGRGF DSPFERLIQH GDFDRVLTRP LSSFVQVLAS EVQLRRLGRA
VQGAGVLIFS LAQVEAFWTP VLLLLLLLSI LSGALIYVGL IVIGATICFW TIKTPEVINV
FTFGGQQLTS LPLSIYDRWI RAVFLSIAPV AFASYPAALV ILGRSDPHGL PAWIAWCAPV
VASVFFAAVL GFWQIGVRRY QSTGT
|
|---|
| |