| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1738 |
|---|
| Symbol | |
|---|
| ID | 5539216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2235564 |
|---|
| End bp | 2236382 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640893877 |
|---|
| Product | DNA binding domain-containing protein |
|---|
| Protein accession | YP_001431848 |
|---|
| Protein GI | 156741719 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4936] Predicted sensor domain |
|---|
| TIGRFAM ID | [TIGR01764] DNA binding domain, excisionase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGATTGC TATTGCATCC TATTGCAACC TGTTGCAACA TCGCAGCCGT GAACGATCTC
CTGACCACCC GTGAAGTGCA GGACCTGCTG AAACTGGATC GAACCACCGT CTACCGTATG
CTCAAAGAAG GGCGGTTAAC GGGGGTGAAG GTCGGGCAGC AGTGGCGTTT TCACCGTCGA
GCAGTCGAGA CGTTGCTCCA GGGCGCGTCA CCCGCTGCGG CGAGTCGCTC GGCGCCAGCC
GATGCCCCCC GTTACGCGCA ACCGCTCACT CCCGTTCCGC TGCCGCTCCA TTGCGTACAG
GCAATCCAGG ATGTCTTCGC CGATCTGACG CGGGTTGGCG TTGTCACCAC CGCTACCGAC
GGCGAGCCGT TGACCCGGAT GAGCAATGGA TGCCGCTTCT GCGCATTGAT CCAGGCGACC
GATGCGGGCA GAGCCGCCTG CCGCGCTTCG TGGCGCGCGC TCGCGGCGCG AAGCGACCGC
ACCCCCCGGA TTGCGACCTG CCACGCCGGG CTGAAGTACA TCCACGCGCG CATCGAGGTG
GACGGGCTTC CAACGGCGAT GCTGATCGCC GGTCAGTTCC GTGTGGACGC CACACCGCTT
GACACGCAGC GGCTGGCGCG CGATGTCGGC GTCGATCCGG GTGCACTCGA CGAAGCGCTG
GATGCAGTGA CGATTCTGGA CGAGCGGATG CGTGCACAAC TCGGCGTCTG GTTGCAGAAA
GTTGCGCACA CCTTCGAGGA AATCGGGCGC GAACGCGCCA CGATGATCAG TCGGCTGCGG
GCGATCAGCG ACCTTGCCGT TCTTGATCGC CCGGATTGA
|
|---|
| Protein sequence | MRLLLHPIAT CCNIAAVNDL LTTREVQDLL KLDRTTVYRM LKEGRLTGVK VGQQWRFHRR
AVETLLQGAS PAAASRSAPA DAPRYAQPLT PVPLPLHCVQ AIQDVFADLT RVGVVTTATD
GEPLTRMSNG CRFCALIQAT DAGRAACRAS WRALAARSDR TPRIATCHAG LKYIHARIEV
DGLPTAMLIA GQFRVDATPL DTQRLARDVG VDPGALDEAL DAVTILDERM RAQLGVWLQK
VAHTFEEIGR ERATMISRLR AISDLAVLDR PD
|
|---|
| |