| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1606 |
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| Symbol | |
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| ID | 5539082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2069909 |
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| End bp | 2071069 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640893743 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001431716 |
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| Protein GI | 156741587 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.906529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTTT TAGAACTCTA TCAACGTATC CAACGTTGGG AGGATTTGCA TACCGAGTTC
AAAGAGCAGG ATGCGCACTC CGATGATATC GCCGCCGCGC TGGTCGCTTT TGCCAACACT
GATGGCGGTC AACTGATTTT CGGCGTCAGC AAGGACCGGG TTATCATCGG CGTGGATGAT
GCGGACCGTG TGATGCAACG CATTGACCAG ATTGCTTACC ATAATTGCGA GCCTCCCGTC
ACCGTGATTC AGGAAACGAT TCCCACAGAA CAGGGCCTCG CGGTTGTTGT GAACATCCCC
AAGGGCGACC AGCGTCCCTA TCGCACGCAG CGGGGAGACT ATTTCATTCG CACCACCTCC
GGGCGCCGGC GCGCTTCCAG ACAAGAACTG TTGCGCCTCT TCCAGTCGGT CGAAAGCCTG
TACTATGACG AAACGCTGGT GTTACGCGCA AGCCTTTCGG ATCTGGACTA TCGGCGCTTC
ACGGTGTTTT TTGAACAATC CTATCAAAGG CTTTTGCAGT CTGAGCAAGA GGTAGAGAAT
CTGCTGCGAA ACATGCGCCT GGTCAGGGAA CAGGCAGGCG TCTGGCATCC GACCCTGGCA
GGTCTGCTTT GCTTTGGCCG CGAGCCGCAA AGTTTCTTCC CCTACGCACA GGTCAACGCG
GCGCGTATCC CCGGCGACTC GCTTGCCACC GCGCCATCGG ATGCCAAGCA AATCGGCGGT
ACCCTGTTTG ATATGTTGGA AGACACGGCG CGTTTTTTGC AGATTCATCT GCCCAGCCCG
CACATCATTC ACGGCTTTGC GCCCGAGCAA CGGACTGAAA TTCCCGAAGA AGCCCTGCGC
GAGTTGTTGG TCAATGCCCT GGTCCACCGC GATTACACCG TTGCGTCGCC CATCCGTCTG
CTGATTTTTG ACCGGCGGAT CGAAATCCGC ACGCCGGGCG CGTTGCCGAA TACGGTCACC
ATCGAAGCTA TTTTGTTGGG GGCGGCGCAT GTGCTTCGCA ATCCCACCAT TTATACGATG
TTCAGCCGGG CCGGCCTGGT CACGAGTTTG GGCAGCGGCG TTTTACGTGC CAAAGAACTC
CTTGAACAGC ACGCTCACAC AACCCTCGAA CTAAAAGTTG TCGCCAATGA ATTTGTCGTG
ATCATCACTC GTCCGGGGTG A
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| Protein sequence | MDVLELYQRI QRWEDLHTEF KEQDAHSDDI AAALVAFANT DGGQLIFGVS KDRVIIGVDD
ADRVMQRIDQ IAYHNCEPPV TVIQETIPTE QGLAVVVNIP KGDQRPYRTQ RGDYFIRTTS
GRRRASRQEL LRLFQSVESL YYDETLVLRA SLSDLDYRRF TVFFEQSYQR LLQSEQEVEN
LLRNMRLVRE QAGVWHPTLA GLLCFGREPQ SFFPYAQVNA ARIPGDSLAT APSDAKQIGG
TLFDMLEDTA RFLQIHLPSP HIIHGFAPEQ RTEIPEEALR ELLVNALVHR DYTVASPIRL
LIFDRRIEIR TPGALPNTVT IEAILLGAAH VLRNPTIYTM FSRAGLVTSL GSGVLRAKEL
LEQHAHTTLE LKVVANEFVV IITRPG
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