| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1550 |
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| Symbol | |
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| ID | 5539026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1989930 |
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| End bp | 1990859 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893688 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_001431661 |
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| Protein GI | 156741532 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.203059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTATTC GTGAGTCCAA GTATATCTGG TTCAACGGCG AGATGGTTGC CTGGGAAAAG
GCGACCGTCC ATGTGATGAC ACATGCCCTG CACTACGGTT CATCGGTGTT CGAGGGCATT
CGCGCCTACG AAACGCCTCA GGGCGCTGCT ATTTTTCGTT TGCGCGAGCA CCTCCGCCGT
CTGTTCGACT CGTGCCGCAT CTATCGGATG GAACTGCCGT TCACGCCGGA GCAATTGTTC
GAAGCATGCC GCGCGGTCGT GCGTGACAAT GGGTTGACGA ACGCCTATAT CCGTCCGCTT
GTGTGGCGCG GCTATGGCGA AATGGGGCTA AACCCGCTGC GCTCGCCGGT CGAGGTGATG
GTCGCAGCCA TGGAATGGGG CGCCTACCTG GGGGCTGAGG GTTTGGAGAA TGGCGTGGAT
GTCCACGTTT CCTCCTGGCA GCGGGTTGCA CCGAATACCC TGCCAGCGAT GGCGAAGGCT
GGCGGCAACT ATCTGTCGTC ACAACTCATT GTGATGGAAG CGGCACGCAA CGGCTATGCC
GAAGGCATCG CGCTCGATGT GCATGGCTGG CTCTCCGAAG GATCGGGCGA AAACCTGTTC
CTCATTCGCG ACGGCGTCAT CTATACGCCG CCGGTGACGG CGGCGCTTCT GCCCGGCATT
ACCCGCGATG CAGTGATCAC ACTGGCGCGC CAGATGGGGT ATGAGGTGCG CGAGCAAAAC
CTGCCGCGCG AAATGCTCTA CCTGGCGGAC GAACTCTTCT TTACCGGCAC AGCGGCTGAG
GTGACGCCGA TCCGCTCGGT CGATAAATTG CCGGTCGGCA ATGGCAAGCG CGGTCCGATC
ACCACCGCTA TCCAAAAGGC GTTCTTTGGT CTTTTCTCCG GCGAAACAGA AGATCGCTGG
GGCTGGCTGA CGCCAGTGGC GTATTCGTAG
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| Protein sequence | MPIRESKYIW FNGEMVAWEK ATVHVMTHAL HYGSSVFEGI RAYETPQGAA IFRLREHLRR
LFDSCRIYRM ELPFTPEQLF EACRAVVRDN GLTNAYIRPL VWRGYGEMGL NPLRSPVEVM
VAAMEWGAYL GAEGLENGVD VHVSSWQRVA PNTLPAMAKA GGNYLSSQLI VMEAARNGYA
EGIALDVHGW LSEGSGENLF LIRDGVIYTP PVTAALLPGI TRDAVITLAR QMGYEVREQN
LPREMLYLAD ELFFTGTAAE VTPIRSVDKL PVGNGKRGPI TTAIQKAFFG LFSGETEDRW
GWLTPVAYS
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