| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1546 |
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| Symbol | |
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| ID | 5539022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1985596 |
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| End bp | 1986717 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893684 |
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| Product | 3-isopropylmalate dehydrogenase |
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| Protein accession | YP_001431657 |
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| Protein GI | 156741528 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.178342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.073036 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGCGG TTATCACTGC GCTTCCCGGC GACGGGATTG GACCAGAGGT GGTGGCGGAG
GGAATGCGCG TATTACGCGC TGTCGGCACG CGATTCGGGC ACACCTTCGA GATACGCGAG
GCATTGATCG GCGGCTGCGC CATCGACGCA ACTGGCACGG CGCTTCCTGA CGAAACGCTC
CACCTGTGCC GCGAGTCGGA CGCCGTGCTC CTCGGTGCAG TCGGCGGACC GAAGTGGGAC
AACCCGGAAG CGCCGGTGCG CCCGGAACAG GGATTGCTCG GCATTCGCAA AGCGCTTGGA
CTATTCGCCA ACCTGCGACC GGTGACGCTC CATCCGCGTC TGATCGCCGC CTCGCCGCTG
CGTCCGGAGC GATTGCAAGG CGTTGACCTC CTGGTGGTGC GTGAACTGAC CGGCGGCATC
TACTTTGGCG AAAAAGGGCG TGACACGACG ATGGACGGCG GTGAAAGCGC CTACGACGAG
TGCGTCTACA CCTCTGCCGA GATCGAACGC ATTGTGCGCG TGGCGGCAAC TCTTGCGCGC
AACCGGCGCA AAAAACTGAC TTCGGTAGAC AAAGCGAACG TTCTGGAGAC CTCACGACTA
TGGCGCAGCG TCACAACGCG CCTGATGCGC GCCGAATTCC CCGATGTTCA GATCGAACAC
ATGCTGGTCG ATGCCTGCGC CATGCACCTC ATTCGTCGTC CAATGGACTT CGACGTCATC
GTGACCGAAA ACATGTTCGG CGATATTCTG ACCGATGAAG CCTCGATGCT GGCAGGCTCG
ATGGGCATGC TCCCCTCTGC CTCGCTCGGC GCGCCGGGCA ACAACGGAAG AGGCACGCAG
ATGGGGTTAT ACGAACCCAT CCACGGCTCG GCGCCCGACA TCGCCGGCAA AGGGATCGCC
AATCCACTGG CGACTATCCT GAGCGTTGCG CTGTTGCTCC GCCACTCACT GGGACTGGAA
GACGAAGCGC GCGCCGTAGA AACCGCAGTC TGGCGCACCC TGGAGGAAGG CATCATCACC
GGCGACATCG CAATGCCCGG AGAGCGCAGC GCCACAACTA CCGAGGTTGG GGCGGCTGTT
GCAGCGTGGA TCGAGAGGGA AGAGGCGAGA AGCGAGAGGT GA
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| Protein sequence | MHAVITALPG DGIGPEVVAE GMRVLRAVGT RFGHTFEIRE ALIGGCAIDA TGTALPDETL
HLCRESDAVL LGAVGGPKWD NPEAPVRPEQ GLLGIRKALG LFANLRPVTL HPRLIAASPL
RPERLQGVDL LVVRELTGGI YFGEKGRDTT MDGGESAYDE CVYTSAEIER IVRVAATLAR
NRRKKLTSVD KANVLETSRL WRSVTTRLMR AEFPDVQIEH MLVDACAMHL IRRPMDFDVI
VTENMFGDIL TDEASMLAGS MGMLPSASLG APGNNGRGTQ MGLYEPIHGS APDIAGKGIA
NPLATILSVA LLLRHSLGLE DEARAVETAV WRTLEEGIIT GDIAMPGERS ATTTEVGAAV
AAWIEREEAR SER
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