| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1537 |
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| Symbol | |
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| ID | 5539013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1961008 |
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| End bp | 1962699 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893675 |
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| Product | light-independent protochlorophyllide reductase subunit B |
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| Protein accession | YP_001431648 |
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| Protein GI | 156741519 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
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| TIGRFAM ID | [TIGR01278] light-independent protochlorophyllide reductase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.61403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000999524 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGACTGG CTCTCTGGAT GTATCAGGGC ACTGCCCATC ACGGTGTCGG ACGGATCGCC
AACAGTATGC GCGGGGTGCA TGCGGTCTTT CATGCGCCGC AGGGCGACGA CTACGTCAAT
CCGATCTTCA CGATGCTGGA GCGCACCCCC GACTTTCCGC GCATGACGAC CAGCATCGTC
AGCGGGCGCG ACCTGGCGCA GGGAACCGTG CGATTGCCCG AAACGCTCCG GCAGGTCGAT
GCGCAGGTGC AACCGGATCT GATTATCGTC TGCGCCAGTT GCTCGACCAT CCTCTTGCAG
GAGGACCTGG AGCGGATGGC GCATAGCGCC GGAACGCGCG CCGAGACGCT GGTGTACGAT
GCCAATCCCT ATCGTATGCA GGAAGTTCGC TCCGCCGACG GGTTGTTCAC TCTTCTGACA
CAACGCTTTG CCCGTTCTCA ACCGCCGACG GCAGTCCCAA GCGTCAATAT TCTCGGTCCG
GCATCGCTCG GCTTCCACAA TCGCAGCGAT CTGATCTGCC TGCGGCGGAT GCTGGCGACC
CTCGGCGTGC AGGTGAATGT CGTCGCGCCC CTTGGCGCAT CGATCCGCGA CCTGGAGCGC
CTTCCGGCAG CCTGGGCAAC GATCGCGCCC TACCGCGAAC TGGGACAAAA CGCCGCGCGC
TGGCTCGACG AGCAGTTTGG CGTTCCGGCG CTCACCGATT CGCCTATCGG CGTGCAACCG
ACCCTGCGCT GGCTACGGCG TCTGGTCGAG ACCCTCAACG ATGCCGGTGA GCGGTTGCAG
CGCCTGACAA ACCCGTTGCG CCTGCCGCCG TTGACTGCCT TCTCGCTCGA TGGCATGAGT
GCGCCGAGTT CGGTCCCCTG GTTTGCGCGC ACTGCCGATA TGGAAAGTTA CAGCATGAAG
CGCGCCTTCG TCTTTGGCGA TGCCACTCAT ACCGTCGGTA TGGTGAAGTT CCTGCGCGAT
GAACTGGGCA TGCAGATCGT TGGGGCGGGG ACCTATCTGG AGCACGAAGC GGACTGGGTG
CGTGGGGAAC TTCAGGACTA CCTGCCCGCC GACGAGACCG GATCGATAGA CACTTCGTTT
CTGGTGACCG AGGTGTTTCA GGATGTCGCG CGGCGTATCG CCGATCTCAC GCCCGAACTG
GTCTGTGGCA CCCAGATGGA ACGCCACGCC TGCCGCAAAC TCGACCTTCC GTGCATGGTC
ATTGCCCCGC CGACGCATAT CGAAAATCAT CTTCTGAGTT ACCGACCGGT GCTTGGCTTT
GATGGCGCCG ATGTGCTGGC GGATACTGTC TACACCACGG CGACACTGGG CATGGAGAAA
CATCTGATCG ACATGTTTGG TGATGCCGGG CTGGAGTACG AGGAACCGAG AACTGAGCGC
CGAGAAGCGG AATTCGGGAA CCAGAAGGTG GAAACTGGTG AACCAGGAAC CGGAGCGCCG
GTGATTGCCC ACGCGGATTC GAACGGTGGC GTTGCCGGTT CGTCGAGCAC TCTCGCTGCT
CAGACGGTCA CAGCATCACC CCGGCTCGTC ACGCCGGTCT GGGCGCCGGA GGCGCAGGCG
ATGCTCAAGA AGGTGCCGTT TTTCGTGCGA GGACGGGTGC AGAAGAATGT CGAACGGTAC
GCAGCGCAAC ACGGGTATGC AACGATAACC GCCGAGATAC TGGTGGAAGC GAAAGAGGCG
CTTGGCGGTT GA
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| Protein sequence | MRLALWMYQG TAHHGVGRIA NSMRGVHAVF HAPQGDDYVN PIFTMLERTP DFPRMTTSIV
SGRDLAQGTV RLPETLRQVD AQVQPDLIIV CASCSTILLQ EDLERMAHSA GTRAETLVYD
ANPYRMQEVR SADGLFTLLT QRFARSQPPT AVPSVNILGP ASLGFHNRSD LICLRRMLAT
LGVQVNVVAP LGASIRDLER LPAAWATIAP YRELGQNAAR WLDEQFGVPA LTDSPIGVQP
TLRWLRRLVE TLNDAGERLQ RLTNPLRLPP LTAFSLDGMS APSSVPWFAR TADMESYSMK
RAFVFGDATH TVGMVKFLRD ELGMQIVGAG TYLEHEADWV RGELQDYLPA DETGSIDTSF
LVTEVFQDVA RRIADLTPEL VCGTQMERHA CRKLDLPCMV IAPPTHIENH LLSYRPVLGF
DGADVLADTV YTTATLGMEK HLIDMFGDAG LEYEEPRTER REAEFGNQKV ETGEPGTGAP
VIAHADSNGG VAGSSSTLAA QTVTASPRLV TPVWAPEAQA MLKKVPFFVR GRVQKNVERY
AAQHGYATIT AEILVEAKEA LGG
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