| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1439 |
|---|
| Symbol | |
|---|
| ID | 5538912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1832720 |
|---|
| End bp | 1834552 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893576 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001431552 |
|---|
| Protein GI | 156741423 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTC GATTGCCGCT CATTGCGCTG GTTGCGCTCT TTCTGGCGCT CTGCGTCCTG
TACAATCTGA CGACGCCGCT CGGCGAGGGA CCGGACGAAC CGGGGCATGC GGCGTATGTG
TTCTTCGTGG CGCGCGAGAG GCGATTGCCG GTGCAGTGTC TGCCGCCATG TGTCAGCGAT
GTGCCGGGGT CGGGGCATCA TCCGCCGCTC GCCTATCTGC TGGCGACCCC GGCGGCGCTC
TGGTTGCCGC ACCCGTTGCG CGCCTTCGAT CTGCCCGGAA ATCCGCGCTT CACCTGGGCG
GGTGGCGATC AGGTGAATGC TGTTGCGCAC GGGAGCCGTG AGCAGTGGCC CTGGGACGCG
CAGGTGTGGG CATGGCGTCT GGCGCGCGGG GTGTCGAGCC TGGCGGGCGC GGCGACGGTG
GTCTTCACGT ATCTGGCGGT ACGTGCGTTG CACCGCTCCA CAGAGCATGC GGCGAATGGC
GATCTGATGG CATTGCTGGC GGCGGCGCTG GTCGCCCTCA ACCCACAATT CATTTTTATC
TCGTCGCTGA TCAGCAACGA TGCGCTGCTG GCGGCGCTTG GCGCGGCGCT GCTCTGGCTG
GTCGTCAGCA GTCCGCGGTC GTTGCTGCGC GCCATGCTGA TTGGTGTCGT TCTGGGACTG
GCGTTGATTA CCAAACAGAG TGCATGGGTG TTTGCGCCGT TTGTGTTTGT GTGGTGTGTA
ACGGGTGGTG TGGCGCATAT GAGCGCGAAA ACGTTGCATC CTTTGCATGC GGCGGATGGA
AGTGCGGCAA CGCCGCGCTC CTCTATGGCG GTGGTGGTTG CCGGGGCGAT GATCATCGCT
GGTTGGTGGT ATCTGCGGAA TTGGCAATTG TATGGCGATC CGCTTGGTTT GCAGGCGTTT
CGGGCGGAAT TTGCCACGCA GGCGTTCGAC GCAACCAATC TGGCAGTCTG GGCAGGTGCG
CTGACAGCTC TCTATGAATC GTTCTGGGCG CGTTTTGGTT GGATGAATCT TCCGGCGCCA
CCGTGGACGA TGGCAGTGTA CGTGGCGCTG CTTGCGGTAT CGGTCGCCGG TTGGGTGCGG
TTGCTGGCGC GCCCGAATAA GGCAATCTGC CGATGGACCT GGCAACTGGC GGCGCTGCCA
ATCCTGTCCC TGGTGTGGGT TGTGAGTTTC GCCTTCACCG CCGGGTTGGT CGCCTGGCAG
GGGCGGCTTC TCTTTCCGGC AATCGCTGCC ATCGCAACGC TCCTGGCATG CGGATTGAGT
GTCTGGCTTC GTCATGGTGC GTCGGTGATG CTGCTCATTG TCGGAATGGC GGGTATTGCG
GCATGGTTGC CGGTCAGCGT GATTCGGCCA GCCTATCCGT TTCAAACGCT CTCCTCATCG
GCGGTGCGCG CCTGGGAGGG ACACGAGACC TACGCACGCT TCGCGCGTTC GACCGAACCC
GGCGCGGTAA TCCGTCGCTG GCGGATCGAA GGGACGCCCC GCCCTGGCGC AACGATTGAA
CTGGCGCTGC TCTGGAATGC TGTGTCGCGC CAGGACCGCG ACTGGTGGAC GTTCGTGCAT
CTGGTTGACG CCAACCGGCG GATTGTGACG GAAGACAACC GTGAGCCGCG CAATGGCGCC
TACCCAATGT CGCAGTGGGT GGCAGGGGAT TGGGTCGAGG CGCGCTACTC GCTGGCAATT
CCCGCCCATC TTTCTCCCGG CGAGTATGCG CTGTGGGTCG GTTTATGGGA CCCGGCGACC
GGACGGCGCG CGGCGTTCTT CGATGATGAC AATGTGTACG ATCCTGACGG CGATCACGTC
GTGCTGACCA CTCTGATGAT CACCAGTCCA TAA
|
|---|
| Protein sequence | MKARLPLIAL VALFLALCVL YNLTTPLGEG PDEPGHAAYV FFVARERRLP VQCLPPCVSD
VPGSGHHPPL AYLLATPAAL WLPHPLRAFD LPGNPRFTWA GGDQVNAVAH GSREQWPWDA
QVWAWRLARG VSSLAGAATV VFTYLAVRAL HRSTEHAANG DLMALLAAAL VALNPQFIFI
SSLISNDALL AALGAALLWL VVSSPRSLLR AMLIGVVLGL ALITKQSAWV FAPFVFVWCV
TGGVAHMSAK TLHPLHAADG SAATPRSSMA VVVAGAMIIA GWWYLRNWQL YGDPLGLQAF
RAEFATQAFD ATNLAVWAGA LTALYESFWA RFGWMNLPAP PWTMAVYVAL LAVSVAGWVR
LLARPNKAIC RWTWQLAALP ILSLVWVVSF AFTAGLVAWQ GRLLFPAIAA IATLLACGLS
VWLRHGASVM LLIVGMAGIA AWLPVSVIRP AYPFQTLSSS AVRAWEGHET YARFARSTEP
GAVIRRWRIE GTPRPGATIE LALLWNAVSR QDRDWWTFVH LVDANRRIVT EDNREPRNGA
YPMSQWVAGD WVEARYSLAI PAHLSPGEYA LWVGLWDPAT GRRAAFFDDD NVYDPDGDHV
VLTTLMITSP
|
|---|
| |