| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1377 |
|---|
| Symbol | |
|---|
| ID | 5538850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1760338 |
|---|
| End bp | 1762095 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640893515 |
|---|
| Product | dynamin family protein |
|---|
| Protein accession | YP_001431491 |
|---|
| Protein GI | 156741362 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1160] Predicted GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.682843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCAT TCCTGACCGG TCGAAAGCTG CTGACCGAGC GCCAGGAGGC GCTGCTCGAA
GCGATTCGCG CGGCGCTCGA GGCGTTGCGC GCTGCGTTGA GGCGGTTCGG CGTCGATGTG
GCGCCTGCCG ATGTCCGGAT TCTCGATGAT GCCATCGCAC ATCTCGACGA ACTCTTCCTG
CTTGTCGTCG CCGGTGAGTA CAATTCGGGC AAATCGAGTT TCATCAATGC ACTGATAGGA
GCGCCGGTCG TTGCCGAGGG TGTGACCCCG ACCACCGACC GGATCACGGT CCTGCGCTAT
GGTGATATGC CGGGCGAGAT GGTCGGCGGC GCATTTCTGG TCGAATATCG ATTTCCGGCT
GAGGTGCTGC GCCGCATGGC GATTGTAGAC ACGCCTGGCA CGAATGCGAT CATTCAGCGC
CACGAAGAGT TGACGCGCGA CTTTATCCCC CGCGCCGATC TCGTGCTGTT CGTAACGTCC
GCCAGCCAGC CGTTTTCCGC CAGTGAACGC TCCTTTCTCG AACTCATCCG CGATTGGGGC
AAAAAAGTCG TCATCATCGT CAACAAAGCC GACCTGCTCG ACGACGCCGG TCTGGCGGAG
GTCGTCGCAT TCGTCGGCAG GCATGCCGAA GACCTGTTTG GTGTGCGCCC CGAGATTTTC
GCCGTCTCGT CGCGGCTGGC ACGCCAGGCG CGCGACGATG ATGATCAGGC GCTGTGGGAT
GCCAGTCGCT TTCCGGCAAT CGAGCAGTAC ATCAGCGACA CCCTGGACGA AGAGCAGCGT
GTGCGCCTGA AATTGCTCTC ACCCCTCGGG GTGGCGCGTC GGTTAGCGGA ACGCTACCTG
ATCGCCGTTG AGGATCGTCT GGCGGCGCTG CGCGATGATG TTGCCGCCAT CGAGAATATC
GAACGACAAC TCGAGCAGTT CCGCAGCGAT CTTGCCGACG ATTTTCAGCG TCACCGCGCC
GAAATCGCCA ATATCCTCAA CGAGTTCGAA CTGCGCGGCA TGCAGTTCTT CGATGAGACC
ATTCGTGTCA GTAATCTGTT TCATCTGGCG CGACATCAGC AGGAGATCAG CGAAGCGTTT
GCGCGTGACA TCGTCGCCGA TGTACCGCAG CAGATCGAAG CGCGCCTTCA GGCGCTGATC
GACTGGATGG TGGAAAAGAA CCTGCGCATC TGGCAGGGGG TCATGGATTA TCTGCGCCGC
GAGCGAGCGG TGCAACACCG CAGCGGACTG ATCGGCGAGA TCGGTGGGAC CTTTGAATAC
AATCGGAATG CCTTGATCGA GTCGGTCGCG CGCGAGGCGG AAAAGATCGT CGCCACCTAC
GACCGCGAAG CGGAGGCGCA GGCGCTGACC GATGAGGTGC GTGCAGCAAT CGCCAGTTCG
ACGCTGGTTG GCGCCGGCGC CGTTGGGATC GGCGCACTCC TGGTGCTGTT GCTGCACGGC
GCATTGCTCG ACGTGACCGG CGTGCTGGTC GCCGGTGTGC TGGCGCTTGG CGGATTGTAC
ATTATTCCAA ATAAGCGCCG CCAGATCAAA CGCCAGTTTC ACCAGCGCGT CGCCGATCTG
CGCGAGACAC TCACCGCAAC GATGGAACGC CAGTTCAACG CTGAACTTGA CCGCATGATC
ACCCGCATTC GTGATGCCAT CGACCCCTAC ACCCGCTTTG TCTACACCCA GCACGACCAT
CTGCTGACAA CACAGCGCGA ACTGTCGGAC GCCGAAGCGG AGATCAGTCG ATTGCAAGCG
GAGGTGGAAC GCTCTTGA
|
|---|
| Protein sequence | MTPFLTGRKL LTERQEALLE AIRAALEALR AALRRFGVDV APADVRILDD AIAHLDELFL
LVVAGEYNSG KSSFINALIG APVVAEGVTP TTDRITVLRY GDMPGEMVGG AFLVEYRFPA
EVLRRMAIVD TPGTNAIIQR HEELTRDFIP RADLVLFVTS ASQPFSASER SFLELIRDWG
KKVVIIVNKA DLLDDAGLAE VVAFVGRHAE DLFGVRPEIF AVSSRLARQA RDDDDQALWD
ASRFPAIEQY ISDTLDEEQR VRLKLLSPLG VARRLAERYL IAVEDRLAAL RDDVAAIENI
ERQLEQFRSD LADDFQRHRA EIANILNEFE LRGMQFFDET IRVSNLFHLA RHQQEISEAF
ARDIVADVPQ QIEARLQALI DWMVEKNLRI WQGVMDYLRR ERAVQHRSGL IGEIGGTFEY
NRNALIESVA REAEKIVATY DREAEAQALT DEVRAAIASS TLVGAGAVGI GALLVLLLHG
ALLDVTGVLV AGVLALGGLY IIPNKRRQIK RQFHQRVADL RETLTATMER QFNAELDRMI
TRIRDAIDPY TRFVYTQHDH LLTTQRELSD AEAEISRLQA EVERS
|
|---|
| |